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Institut de Biologie StructuraleGrenoble / France

2013

Agirre J, Goret G, Legoff M, Sanchez-Eugenia R, Marti G, Navaza J, Guerin D and Neumann E
Cryo-TEM reconstructions of Triatoma Virus particles : a clue to unravel genome delivery and capsid disassembly.
Journal of General Virology (2013) 94(5) : 1058-1068

Aleksandrov A and Field M
Mechanism of activation of elongation factor Tu by ribosome : Catalytic histidine activates GTP by protonation.
Rna-a Publication of the Rna Society (2013) 19(9) : 1218-1225

Allorent G, Tokutsu R, Roach T, Peers G, Cardol P, Girard-Bascou J, Seigneurin-Berny D, Petroutsos D, Kuntz M, Breyton C, Franck F, Wollman FA, Niyogi KK, Krieger-Liszkay A, Minagawa J and Finazzi G
A dual strategy to cope with high light in Chlamydomonas reinhardtii.
Plant Cell (2013) 25(2) : 545-557

Appolaire A, Rosenbaum E, Dura MA, Colombo M, Marty V, Noirclerc Savoye M, Godfroy A, Schoehn G, Girard E, Gabel F and Franzetti B
Pyrococcus horikoshii TET2 peptidase assembling process and associated functional regulation.
Journal of Biological Chemistry (2013) 288(31) : 22542-22554

Arantes GM, Bhattacharjee A and Field MJ
Homolytic cleavage of FeS bonds in rubredoxin under mechanical stress.
Angewandte Chemie-International Edition (2013) 52(31) : 8144-8146

Bachega JFR, Timmers LFSM, Assirati L, Bachega LR, Field MJ and Wymore T
GTKDynamo : A PyMOL plug-in for QC/MM hybrid potential simulations.
Journal of Computational Chemistry (2013) 34(25) : 2190-2196

Bachmeier A, Wang VCC, Woolerton TW, Bell S, Fontecilla-Camps JC, Can M, Ragsdale SW, Chaudhary YS and Armstrong FA
How light-harvesting semiconductors can alter the bias of reversible electrocatalysts in favor of H-2 production and CO2 reduction.
Journal of the American Chemical Society (2013) 135(40) : 15026-15032

Bagag A, Jault JM, Sidahmed-Adrar N, Refregiers M, Giuliani A and Le Naour F
Characterization of hydrophobic peptides in the presence of detergent by photoionization mass spectrometry.
PLoS One (2013) 8(11) : e79033

Baggioli A, Crescenzi O, Field MJ, Castiglione F and Raos G
Computational 17O-NMR spectroscopy of organic acids and peracids : comparison of solvation models.
Physical Chemistry Chemical Physics (2013) 15(4) : 1130-1140

Berland S, Ma Y, Marie A, Andrieu JP, Bedouet L and Feng Q
Proteomic and profile analysis of the proteins laced with aragonite and vaterite in the freshwater mussel Hyriopsis cumingii shell biominerals.
Protein Peptide Letters (2013) 20(10) : 1170-1180

Bhattacharjee A, Andreiadis ES, Chavarot-Kerlidou M, Fontecave M, Field MJ and Artero V
A computational study of the mechanism of hydrogen evolution by cobalt(diimine-dioxime) catalysts.
Chemistry - A European journal (2013) 19(45) : 15166-15174

Bally I, Ancelet S, Moriscota C, Gonnet F, Mantovani A, Daniele R,
Schoehn G, Arlaud GJ, and Thielen NM

Expression of recombinant human complement C1q allows identification of the C1r/C1s-binding sites.
Proceedings of the National Academy of Sciences (2013) 110(21) : 8650-8655

Benoit MP, Imbert L, Palencia A, Perard J, Ebel C, Boisbouvier J and Plevin MJ
The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains.
Nucleic Acids Research (2013) 41(7) : 4241-4252

Benoit MP and Plevin MJ
Backbone resonance assignments of the micro-RNA precursor binding region of human TRBP.
Biomolecular NMR Assignments (2013) 7(2) : 229-233

Bernardi A, Jimenez-Barbero J, Casnati A, De Castro C, Darbre T, Fieschi F, Finne J, Funken H, Jaeger KE, Lahmann M, Lindhorst TK, Marradi M, Messner P, Molinaro A, Murphy PV, Nativi C, Oscarson S, Penades S, Peri F, Pieters RJ, Renaudet O, Reymond JL, Richichi B, Rojo J, Sansone F, Schaffer C, Turnbull WB, Velasco-Torrijos T, Vidal S, Vincent S, Wennekes T, Zuilhof H and Imberty A
Multivalent glycoconjugates as anti-pathogenic agents.
Chemical Society Reviews (2013) 42(11) : 4709-4727

Bersch B, Bougault C, Roux L, Favier A, Vernet T and Durmort C
New insights into histidine triad proteins : Solution structure of a Streptococcus pneumoniae PhtD domain and zinc transfer to AdcAII.
PLoS One (2013) 8(11) : e81168

Bologna NG, Schapire AL, Zhai J, Chorostecki U, Boisbouvier J, Meyers BC and Palatnik JF
Multiple RNA recognition patterns during microRNA biogenesis in plants.
Genome Research (2013) 23(10) : 1675-1678

Bougault C, Lecoq L, Hediger S, Takahashi H, De Paepe G, Arthur M and Simorre JP
Molecular interactions with the bacterial cell wall by liquid state, standard and DNP solid state NMR.
FEBS Journal (2013) 280(suppl1) : 628-628

Bouguelia S, Roupioz Y, Slimani S, Mondani L, Casabona MG, Durmort C, Vernet T, Calemczuk R and Livache T
On-chip microbial culture for the specific detection of very low levels of bacteria.
Lab on Chip (2013) 13(20) : 4024-4032

Bourhis JM, Vadon-Le Goff S, Afrache H, Mariano N, Kronenberg D, Thielens N, Moali C and Hulmes DJS
Procollagen C-proteinase enhancer grasps the stalk of the C-propeptide trimer to boost collagen precursor maturation.
Proceedings of the National Academy of Sciences (2013) 110(16) : 6394-6399

Breyton C, Flayhan A, Gabel F, Lethier M, Durand G, Boulanger P, Chami M and Ebel C
Assessing the conformational changes of pb5, the receptor-binding protein of phage T5, upon binding to its Escherichia coli receptor FhuA.
Journal of Biological Chemistry (2013) 288(42) : 30763-30772

Breyton C, Gabel F, Lethier M, Flayhan A, Durand G, Jault JM, Juillan-Binard C, Imbert L, Moulin M, Ravaud S, Hartlein M and Ebel C
Small angle neutron scattering for the study of solubilised membrane proteins.
European Physical Journal E soft Matter (2013) 36(7) : 71

Büldt G, Gordeliy V, Klare JP, Engelhard M
Sensory Rhodopsin II : Signal Development and Transduction
Encyclopedia of Biophysics (2013) : 2312-2315

Canaguier S, Fourmond V, Perotto CU, Fize J, Pecaut J, Fontecave M, Field MJ and Artero V
Catalytic hydrogen production by a Ni-Ru mimic of NiFe hydrogenases involves a proton-coupled electron transfer step.
Chemical Communications (Camb) (2013) 49(44) : 5004-5006

Candat A, Poupart P, Andrieu J-P, Chevrollier A, Reynier P, Rogniaux H, Avelange-Macherel M-H and Macherel D
Experimental determination of organelle targeting peptide cleavage sites using transient expression of GFP translational fusions.
Analytical Biochemistry (2013) 434(1) : 44–51

Carletti E, Colletier JP, Schopfer LM, Santoni G, Masson P, Lockridge O, Nachon F and Weik M
Inhibition pathways of the potent organophosphate CBDP with cholinesterases revealed by X-ray crystallographic snapshots and mass spectrometry.
Chemical Research in Toxicology (2013) 26(2) : 280-289

Chenevier P, Mugherli L, Darbe S, Darchy L, DiManno S, Tran PD, Valentino F, Iannello M, Volbeda A, Cavazza C and Artero V
Hydrogenase enzymes : Application in biofuel cells and inspiration for the design of noble-metal free catalysts for H2 oxidation.
Comptes Rendus Chimie (2013) 16(5) : 491-505

Connell BJ and Lortat-Jacob H
Human Immunodeficiency Virus and Heparan Sulfate : from attachment to entry inhibition.
Frontiers in Immunology (2013) 4 : 385. doi : 10.3389/fimmu.2013.00385

Communie G, Crepin T, Maurin D, Jensen MR, Blackledge M and Ruigrok RWH
Structure of the tetramerization domain of measles virus phosphoprotein.
Journal of Virology (2013) 87(12) : 7166-7169

Communie G, Habchi J, Yabukarski F, Blocquel D, Schneider R, Tarbouriech N, Papageorgiou N, Ruigrok RW, Jamin M, Ringkjobing Jensen M, Longhi S and Blackledge M
Atomic resolution description of the interaction between the nucleoprotein and phosphoprotein of Hendra virus.
PLoS Pathogens (2013) 9(9) : e1003631

Couturier J, Prosper P, Winger AM, Hecker A, Hirasawa M, Knaff D, Gans P, Jacquot JP, Navaza A, Haouz A and Rouhier N
In the absence of thioredoxins, what are the reductants for peroxiredoxins in Thermotoga maritima ?
Antioxidants and Redox Signaling (2013) 18(13) : 1613-1622

Delehedde M, Devenyns L, Maurage CA, and Vivès RR
Endocan in cancers : A Lesson from a circulating dermatan sulfate proteoglycan.
International Journal of Cell Biology (2013) : art.no. 705027

Desfosses A, Ribeiro EA, Jr., Schoehn G, Blondel D, Guilligay D, Jamin M, Ruigrok RW and Gutsche I
Self-organization of the vesicular stomatitis virus nucleocapsid into a bullet shape.
Nature Communications (2013) 4 : 1429

Despras G, Bernard C, Perrot A, Cattiaux L, Prochiantz A, Lortat-Jacob H and Mallet J-M
Toward libraries of biotinylated chondroitin sulfate analogs : from synthesis to in vivo studies.
Chemistry - A European Journal (2013) 19 : 531-540

Dian C, Bernaudat F, Langer K, Oliva Mizar F, Fornerod M, Schoehn G, Müller Christoph W and Petosa C
Structure of a truncation mutant of the nuclear export factor CRM1 provides insights into the auto-inhibitory role of its C-terminal helix.
Structure (2013) 8(6) : 1338–1349

Discola KF, Forster A, Boulay F, Simorre JP, Attree I, Dessen A and Job V
Membrane and chaperone recognition by the major translocator protein PopB of the Type III secretion system of Pseudomonas aeruginosa.
Journal of Biological Chemistry (2014) 289(6) : 3591-3601

Doknic D, Abramo M, Sutkeviciute I, Reinhardt A, Guzzi C, Schlegel MK, Potenza D, Nieto PM, Fieschi F, Seeberger PH and Bernardi A
Synthesis and characterization of linker-armed fucose-based glycomimetics.
European Journal of Organic Chemistry (2013) 2013(24) : 5303-5314

Dow JM, Gabel F, Sargent F and Palmer T
Characterization of a pre-export enzyme-chaperone complex on the twin-arginine transport pathway.
Biochemical Journal (2013) 452(1) : 57-66

Dumont E, Pompidor G, D’Aleo A, Vicat J, Toupet L, Kahn R, Girard E, Maury O and Giraud N
Exploration of the supramolecular interactions involving tris-dipicolinate lanthanide complexes in protein crystals by a combined biostructural, computational and NMR study.
Physical Chemistry Chemical Physics (2013) 15(41) : 18235-18242

Echalier A, Pan Y, Birol M, Tavernier N, Pintard L, Hoh F, Ebel C, Galophe N, Claret FX and Dumas C
Insights into the regulation of the human COP9 signalosome catalytic subunit, CSN5/Jab1.
Proceedings of the National Academy of Sciences (2013) 110(4) : 1273-1278

Effantin G, Dordor A, Sandrin V, Martinelli N, Sundquist WI, Schoehn G and Weissenhorn W
ESCRT-III CHMP2A and CHMP3 form variable helical polymers in vitro and act synergistically during HIV-1 budding.
Cellular Microbiology (2013) 15(2) : 213-226

Effantin G, Hamasaki R, Kawasaki T, Bacia M, Moriscot C, Weissenhorn W, Yamada T and Schoehn G
Cryo-electron microscopy three-dimensional structure of the jumbo phage ΦRSL1 infecting the phytopathogen Ralstonia solanacearum.
Structure (2013) 21(2) : 298-305

Emadali A, Rousseaux S, Bruder-Costa J, Rome C, Duley S, Hamaidia S, Betton P, Debernardi A, Leroux D, Bernay B, Kieffer-Jaquinod S, Combes F, Ferri E, McKenna CE, Petosa C, Bruley C, Garin J, Ferro M, Gressin R, Callanan MB and Khochbin S
Identification of a novel BET bromodomain inhibitor-sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers.
EMBO Molecular Medicine (2013) 5(8) : 1180-1195

Esmieu C, Cherrier MV, Amara P, Girgenti E, Marchi-Delapierre C, Oddon F, Iannello M, Jorge-Robin A, Cavazza C and Ménage S
Oxygenase built from scratch : substrate binding site identified using a docking approach.
Angewandte Chemie International Edition (2013) 52(14) : 3922-3925

Evans RM, Parkin A, Roessler MM, Murphy BJ, Adamson H, Lukey MJ, Sargent F, Volbeda A, Fontecilla-Camps JC and Armstrong FA
Principles of sustained enzymatic hydrogen oxidation in the presence of oxygen - The crucial influence of high potential Fe-S clusters in the electron relay of [NiFe]-hydrogenases.
Journal of the American Chemical Society (2013) 135(7) : 2694-2707

Estrozi LF, Settembre EC, Goret G, McClain B, Zhang X, Chen JZ, Grigorieff N and Harrison SC
Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles.
Journal of Molecular Biology (2013) 425(1) : 124-132

Favini-Stabile S, Contreras-Martel C, Thielens N and Dessen A
MreB and MurG as scaffolds for the cytoplasmic steps of peptidoglycan biosynthesis.
Environmental Microbiology (2013) 15(12) : 3218-3228

Ferrer J-L, Larive NA, Bowler MW and Nurizzo D
Recent progress in robot-based systems for crystallography and their contribution to drug discovery.
Expert Opinion on Drug Discovery (2013) 7(8) : 835-847

Flayhan A, Vellieux FM, Lurz R, Maury O, Contreras-Martel C, Girard E, Boulanger P and Breyton C
Crystal structure of pb9, the distal tail protein of bacteriophage T5 : A conserved structural motif among all siphophages.
_ Journal of Virology (2013) 88(2) : 820-828

Fragneto G and Gabel F
Editorial on the Topical Issue "Neutron Biological Physics".
European Physical Journal E (2013) 36(7) : 81

Fron E, Van der Auweraer M, Moeyaert B, Michiels J, Mizuno H, Hofkens J and Adam V
Revealing the excited-state dynamics of the fluorescent protein dendra2.
Journal of Physical Chemistry B (2013) 117(8) : 2300-2313

Gabel F
Combining small-angle neutron and X-ray scattering for studying protein denaturation.
Neutron News (2011) 22(3) : 20-23

Gaboriaud C, Gupta RK, Martin L, Lacroix M, Serre L, Teillet F, Arlaud GJ, Rossi V and Thielens NM
The serine protease domain of MASP-3 : enzymatic properties and crystal structure in complex with ecotin.
PLoS One (2013) 8(7) : e67962

Gansmüller A, Simorre J-P and Hediger S
Windowed R-PDLF recoupling : A flexible and reliable tool to characterize molecular dynamics.
Journal of Magnetic Resonance (2013) 234 : 154-164

Garman EF and Weik M
Radiation damage to biological macromolecules : some answers and more questions.
Journal of Synchrotron Radiation (2013) 20(Pt 1) : 1-6

Gogonea V, Gerstenecker GS, Wu ZP, Lee X, Topbas C, Wagner MA, Tallant TC, Smith JD, Callow P, Pipich V, Malet H, Schoehn G, DiDonato JA and Hazen SL
The low-resolution structure of nHDL reconstituted with DMPC with and without cholesterol reveals a mechanism for particle expansion.
Journal of Lipid Research (2013) 54(4) : 966-983

Goutte-Gattat D, Shuaib M, Ouararhni K, Gautier T, Skoufias DA, Hamiche A and Dimitrov S
Phosphorylation of the CENP-A amino-terminus in mitotic centromeric chromatin is required for kinetochore function.
Proceedings of the National Academy of Sciences (2013) 110(21) : 8579-8584

Guerry P, Mollica L and Blackledge M
Mapping protein conformational energy landscapes using NMR and molecular simulation.
Chemphyschem (2013) 14(13) : 3046-3058

Guerry P, Salmon L, Mollica L, Ortega Roldan JL, Markwick P, van Nuland NA, McCammon JA and Blackledge M
Mapping the population of protein conformational energy sub-States from NMR dipolar couplings.
Angewandte Chemie International Edition (2013) 52(11) : 3181-3185

Gushchin I, Chervakov P, Kuzmichev P, Popov AN, Round E, Borshchevskiy V, Ishchenko A, Petrovskaya L, Chupin V, Dolgikh DA, Arseniev AA, Kirpichnikov M and Gordeliy V
Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria.
Proceedings of the National Academy of Sciences (2013) 110(31) : 12631-12636

Gushchin I, Gordeliy V and Grudinin S
Two distinct states of the HAMP domain from sensory rhodopsin transducer observed in unbiased molecular dynamics simulations.
PLoS One (2013) 8(7) : e66917

Haller JD and Schanda P
Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR : a critical evaluation of experimental approaches and application to crystalline ubiquitin.
Journal of Biomolecular NMR (2013) 57(3) : 263-280

Hamdane D, Bruch E, Un S, Field M and Fontecave M
Activation of a unique flavin-dependent tRNA-methylating agent.
_ Biochemistry (2013) 52(49) : 8949-8956

Heidari Khajepour MY, Lebrette H, Vernede X, Rogues P and Ferrer J-L
A geometrical approach for semi-automated crystal centering and in situ X-ray diffraction data collection.
Journal of Applied Crystallography (2013) 46 : 740-745

Heidari Khajepour MY, Vernede X, Cobessi D, Lebrette H, Rogues P, Terrien M, Berzin C and Ferrer J-L
REACH : Robotic Equipment for Automated Crystal Harvesting, using a 6-axis robot arm and a micro-gripper.
Acta Crystallographica D Biological Crystallography (2012) 69(3) : 381-387

Hennig J, Wang I, Sonntag M, Gabel F and Sattler M
Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex.
Journal of Biomolecular NMR (2013) 56(1) : 17-30

Henriksen ML, Brandt J, Andrieu JP, Nielsen C, Jensen PH, Holmskov U, Jorgensen TJ, Palarasah Y, Thielens NM and Hansen S
Heteromeric complexes of native collectin kidney 1 and collectin liver 1 are found in the circulation with MASPs and activate the complement system.
Journal of Immunology (2013) 191(12) : 6117-6127

Henriksen ML, Brandt J, Iyer SS, Thielens NM and Hansen S
Characterization of the interaction between collectin 11 (CL-11, CL-K1) and nucleic acids.
Molecular Immunology (2013) 56(4) : 757-767

Hirai M, Kimura R, Takeuchi K, Sugiyama M, Kasahara K, Ohta N, Farago B, Stadler A and Zaccai G
Change of dynamics of raft-model membrane induced by amyloid-beta protein binding.
European Physical Journal E (2013) 36(7) : 74

Hrast M, Turk S, Sosič I, Knez D, Randall CP, Barreteau H, Contreras-Martel C, Dessen A, O’Neill AJ, Mengin-Lecreulx D, Blanot D and Gobec S
Structure–activity relationships of new cyanothiophene inhibitors of the essential peptidoglycan biosynthesis enzyme MurF.
European Journal of Medicinal Chemistry (2013) 66 : 32-45

Huang JR, Ozenne V, Jensen MR and Blackledge M
Direct prediction of NMR residual dipolar couplings from the primary sequence of unfolded proteins.
Angewandte Chemie International Edition (2013) 52(2) : 687-690

Hulsik DL, Liu YY, Strokappe NM, Battella S, El Khattabi M, McCoy LE, Sabin C, Hinz A, Hock M, Macheboeuf P, Bonvin AMJJ, Langedijk JPM, Davis D, Quigley AF, Aasa-Chapman MMI, Seaman MS, Ramos A, Poignard P, Favier A, Simorre JP, Weiss RA, Verrips CT, Weissenhorn W and Rutten L
A gp41 MPER-specific llama VHH requires a hydrophobic CDR3 for neutralization but not for antigen recognition.
PLoS Pathogens (2013) 9(3) : e1003202

Hrast M, Turk S, Sosič I, Knez D, Randall CP, Barreteau H, Contreras-Martel C, Dessen A, O’Neill AJ, Mengin-Lecreulx D, Blanot D and Gobec S
Structure–activity relationships of new cyanothiophene inhibitors of the essential peptidoglycan biosynthesis enzyme MurF.
European Journal of Medicinal Chemistry (2013) 66 : 32-45

Hulsik DL, Liu YY, Strokappe NM, Battella S, El Khattabi M, McCoy LE, Sabin C, Hinz A, Hock M, Macheboeuf P, Bonvin AMJJ, Langedijk JPM, Davis D, Quigley AF, Aasa-Chapman MMI, Seaman MS, Ramos A, Poignard P, Favier A, Simorre JP, Weiss RA, Verrips CT, Weissenhorn W and Rutten L
A gp41 MPER-specific llama VHH requires a hydrophobic CDR3 for neutralization but not for antigen recognition.
PLoS Pathogens (2013) 9(3) : e1003202

Iesmantavicius V, Jensen MR, Ozenne V, Blackledge M, Poulsen FM and Kjaergaard M
Modulation of the intrinsic helix propensity of an intrinsically disordered protein reveals long-range helix-helix interactions.
Journal of the American Chemical Society (2013) 135(27) : 10155-10163

Indorato R-L, DeBonis S, Kozielski F, Garcia-Saez I and Skoufias DA
STLC-resistant cell lines as tools to classify chemically divergent Eg5 targeting agents according to their mode of action and target specificity.
Biochemical Pharmacology (2013) 86(10) : 1441–1451

Isaksson L, Mayzel M, Saline M, Pedersen A, Rosenlöw J, Brutscher B, Karlsson BG and Orekhov VY
Highly efficient NMR assignment of intrinsically disordered proteins : Application to B- and T cell receptor domains.
PLoS One (2013) 8(5) : e62947

Ishchenko A, Round E, Borshchevskiy V, Grudinin S, Gushchin I, Klare JP, Balandin T, Remeeva A, Engelhard M, Büldt G and Gordeliy V
Ground state structure of D75N mutant of sensory rhodopsin II in complex with its cognate transducer.
Journal of Photochemistry and Photobiology B : Biology (2013) 123(5) : 55-58

Jacky BP, Garay PE, Dupuy J, Nelson JB, Cai B, Molina Y, Wang J, Steward LE, Broide RS, Francis J, Aoki KR, Stevens RC and Fernandez-Salas E
Identification of fibroblast growth factor receptor 3 (FGFR3) as a protein receptor for botulinum neurotoxin serotype A (BoNT/A).
PLoS Pathogens (2013) 9(5) : e1003369

Jacquet M, Lacroix M, Ancelet S, Gout E, Gaboriaud C, Thielens NM and Rossi V
Deciphering complement receptor Type 1 interactions with recognition proteins of the lectin complement pathway.
Journal of Immunology (2013) 190(7) : 3721-3731

Jackson CJ, Liu JW, Carr PD, Younus F, Coppin C, Meirelles T, Lethier M, Pandey G, Ollis DL, Russell RJ, Weik M and Oakeshott JG
Structure and function of an insect alpha-carboxylesterase (alphaEsterase7) associated with insecticide resistance.
Proceedings of the National Academy of Sciences (2013) 110(25) : 10177-10182

Jensen MR, Ruigrok RW and Blackledge M
Describing intrinsically disordered proteins at atomic resolution by NMR.
Current Opinion in Structural Biology (2013) 23(3) : 426-435

Kragelj J, Ozenne V, Blackledge M and Ringkjobing Jensen M
Conformational propensities of intrinsically disordered proteins from NMR chemical shifts.
Chemphyschem (2013) 14(13) : 3034-3045

Lapinaite A, Simon B, Skjaerven L, Rakwalska-Bange M, Gabel F and Carlomagno T
The structure of the box C/D enzyme reveals regulation of RNA methylation.
Nature (2013) 502(7472) : 519-523

Le Roy A, Nury H, Wiseman B, Sarwan J, Jault JM and Ebel C
Sedimentation velocity analytical ultracentrifugation in hydrogenated and deuterated solvents for the characterization of membrane proteins.
Methods in Molecular Biology (2013) 1033 : 219-251

Lebrette H, Iannello M, Fontecilla-Camps JC and Cavazza C
The binding mode of Ni-(L-His)2 in NikA revealed by X-ray crystallography.
Journal of Inorganic Biochemistry (2013) 121 : 16-18

Lecoq L, Dubee V, Triboulet S, Bougault C, Hugonnet JE, Arthur M and Simorre JP
Structure of Enterococcus faeciuml,d-transpeptidase acylated by ertapenem provides insight into the inactivation mechanism.
ACS Chemical Biology (2013) 8(6) : 1140-1146

Legendre B, Tokarski C, Chang Y, De Freitas Caires N, Lortat-Jacob H, De Nadaï P, Rolando C, Duez C, Tsicopoulos A and Lassalle P
The disulfide bond between cysteine 10 and cysteine 34 is required for CCL18 activity.
Cytokine (2013) 64 : 463-470

Lefevre J, Savarin P, Gans P, Hamon L, Clement MJ, David MO, Bosc C, Andrieux A and Curmi PA
Structural basis for the association of MAP6 protein with microtubules and its regulation by calmodulin.
Journal of Biological Chemistry (2013) 288(34) : 24910-24922

Lombardi C, Ayach M, Beaurepaire L, Chenon M, Andreani J, Guerois R, Jupin I and Bressanelli S
A compact viral processing proteinase/ubiquitin hydrolase from the OTU family.
PLoS Pathogens (2013) 9(8) : e1003560

Lutje Hulsik D, Liu YY, Strokappe NM, Battella S, El Khattabi M, McCoy LE, Sabin C, Hinz A, Hock M, Macheboeuf P, Bonvin AM, Langedijk JP, Davis D, Forsman Quigley A, Aasa-Chapman MM, Seaman MS, Ramos A, Poignard P, Favier A, Simorre JP, Weiss RA, Verrips CT, Weissenhorn W and Rutten L
A gp41 MPER-specific llama VHH requires a hydrophobic CDR3 for neutralization but not for antigen recognition.
PLoS Pathogens (2013) 9(3) : e1003202

Ma Y, Berland S, Andrieu J-P, Feng Q and Bédouet L
What is the difference in organic matrix of aragonite vs. vaterite polymorph in natural shell and pearl ? Study of the pearl-forming freshwater bivalve mollusc Hyriopsis cumingii.
Materials Science and Engineering : C (2013) 33(3) : 1521-1529

Ma P, Varela F, Magoch M, Silva AR, Rosario AL, Brito J, Oliveira TF, Nogly P, Pessanha M, Stelter M, Kletzin A, Henderson PJ and Archer M
An efficient strategy for small-scale screening and production of archaeal membrane transport proteins in Escherichia coli.
_ PLoS One (2013) 8(10) : e76913

Mädler S, Boeri Erba E, Zenobi R
MALDI-ToF Mass spectrometry for studying noncovalent complexes of biomolecules.
Topics in Current Chemistry (2013) 331 : 1-36

Marion D
An introduction to biological NMR spectroscopy.
Molecular and Cellular Proteomics (2013) 12(11) : 3006-3025

Marty V, Jasnin M, Fabiani E, Vauclare P, Gabel F, Trapp M, Peters J, Zaccai G and Franzetti B
Neutron scattering : a tool to detect in vivo thermal stress effects at the molecular dynamics level in micro-organisms.
Journal of the Royal Society Interface (2013) 10(82) : 20130003

Mas G, Crublet E, Hamelin O, Gans P and Boisbouvier J
Specific labeling and assignment strategies of valine methyl groups for NMR studies of high molecular weight proteins.
Journal of Biomolecular NMR (2013) 57(3) : 251-262

Mauriello CT, Pallera HK, Sharp JA, Woltmann JL, Qian SZ, Hair PS, van der Pol P, van Kooten C, Thielens NM, Lattanzio FA, Cunnion KM and Krishna NK
A novel peptide inhibitor of classical and lectin complement activation including ABO incompatibility.
Molecular Immunology (2013) 53(1-2) : 132-139

Mickaël V. Cherrier, Sylvain Engilberge, Patricia Amara, Alice Chevalley, Michèle Salmain, and Juan C. Fontecilla-Camps
Structural Basis for Enantioselectivity in the Transfer Hydrogenation of a Ketone Catalyzed by an Artificial Metalloenzyme
Eur.J.Inorg.Chem. 2013, 3596-3600

Mollica L, Baias M, Lewandowski JR, Wylie BJ, Sperling LJ, Rienstra CM, Emsley L and Blackledge M
Atomic-resolution structural dynamics in crystalline proteins from NMR and molecular simulation.
Journal of Physical Chemistry Letters (2013) 3(23) : 3657-3662

Montellier E, Boussouar F, Rousseaux S, Zhang K, Buchou T, Fenaille F, Shiota H, Debernardi A, Hery P, Curtet S, Jamshidikia M, Barral S, Holota H, Bergon A, Lopez F, Guardiola P, Pernet K, Imbert J, Petosa C, Tan M, Zhao Y, Gerard M and Khochbin S
Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B.
Genes & Development (2013) 27(15) : 1680-1692

Morlot C, Bayle L, Jacq M, Fleurie A, Tourcier G, Galisson F, Vernet T, Grangeasse C and Di Guilmi AM
Interaction of Penicillin-Binding Protein 2x and Ser/Thr protein kinase StkP, two key players in Streptococcus pneumoniae R6 morphogenesis.
Molecular Microbiology (2013) 90(1) : 88-102

Mouesca JM, Amara P, Fontecilla-Camps JC
Electronic States of the O2-tolerance [NiFe] hydrogenase proximal cluster.
Proceedings of the National Academy of Sciences of the United States of America (2013) 110 : E2538

Mouesca J-M, Fontecilla-Camps JC and Amara P
The structural plasticity of the proximal [4Fe3S] cluster is responsible for the O2 tolerance of membrane-bound [NiFe] hydrogenases.
Angewandte Chemie International Edition (2013) 52 : 2002-2006

Nachon F, Brazzolotto X, Trovaslet M and Masson P
Progress in the development of enzyme-based nerve agent bioscavengers.
Chemico-Biological Interactions (2013) 206(3) : 536–544

Nachon F, Carletti E, Ronco C, Trovaslet M, Nicolet Y, Jean L, Renard PY
Crystal structures of human cholinesterases in complex with huprine W and tacrine : elements of specificity for anti-Alzheimer’s drugs targeting acetyl- and butyryl-cholinesterase.
Biochemical Journal (2013) 453 : 392-9

Nagy G, Kovacs L, Unnep R, Zsiros O, Almasy L, Rosta L, Timmins P, Peters J, Posselt D and Garab G
Kinetics of structural reorganizations in multilamellar photosynthetic membranes monitored by small-angle neutron scattering.
European Physical Journal E (2013) 36(7) : 69

Natali F, Gerelli Y, Stelletta C and Peters J
Anomalous proton dynamics of water molecules in neural tissue as seen by quasi-elastic neutron scattering. Impact on medical imaging techniques.
4th International Symposium on Slow Dynamics in Complex Systems (2013) 1518 : 551-557

Neves D, Job V, Dortet L, Cossart P and Dessen A
Structure of Internalin InlK from the Human Pathogen Listeria monocytogenes.
Journal of Molecular Biology (2013) 425(22) : 4520–4529

Nicolet Y, Rohac R, Martin L and Fontecilla-Camps JC
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Proceedings of the National Academy of Sciences (2013) 110(18) : 7188-7192

Noirclerc-Savoye M, Lantez V, Signor L, Philippe J, Vernet T and Zapun A
Reconstitution of membrane protein complexes involved in pneumococcal septal cell wall assembly.
PLoS One (2013) 8(9) : e75522

Ortega Roldan JL, Casares S, Ringkjobing Jensen M, Cardenes N, Bravo J, Blackledge M, Azuaga AI and van Nuland NA
Distinct ubiquitin binding modes exhibited by SH3 domains : Molecular determinants and functional implications.
PLoS One (2013) 8(9) : e73018

Pederzoli-Ribeil M, Angelot F, Millet A, Kantari C, Reuter N, Mouthon L, Frachet P, Saas P and Witko-Sarsat V
Proteinase 3 (PR3) is a phosphatidylserine-binding protein that can bind microparticles : Relevance in the context of granulomatosis with polyangiitis (GPA).
La Presse Médicale (2013) 42(4, Part 2) : 652

Perino J, Thielens NM, Crouch E, Spehner D, Crance JM and Favier AL
Protective effect of surfactant protein d in pulmonary vaccinia virus infection : implication of A27 viral protein.
Viruses (2013) 5(3) : 928-953

Peters J, Giudici-Orticoni MT, Zaccai G and Guiral M
Dynamics measured by neutron scattering correlates with the organization of bioenergetics complexes in natural membranes from hyperthermophile and mesophile bacteria.
European Physical Journal E Soft Matter (2013) 36(7) : 78

Peters J and Kneller GR
Motional heterogeneity in human acetylcholinesterase revealed by a non-Gaussian model for elastic incoherent neutron scattering.
The Journal of Chemical Physics (2013) 139(16) : 165102

Peters NT, Morlot C, Yang DC, Uehara T, Vernet T and Bernhardt TG
Structure-function analysis of the LytM domain of EnvC, an activator of cell wall remodelling at the Escherichia coli division site.
Molecular Microbiology (2013) 89(4) : 690-701

Pietrucci F, Mollica L and Blackledge M
Mapping the native conformational ensemble of proteins from a combination of simulations and experiments : New insight into the src-SH3 domain.
_ Journal of Physical Chemistry Letters (2013) 4(11) : 1943-1948

Portran D, Zoccoler M, Gaillard J, Stoppin-Mellet V, Neumann E, Arnal I, Martiel JL and Vantard M
MAP65/Ase1 promote microtubule flexibility.
Molecular Biology of the Cell (2013) 24(12) : 1964-1973

Radzimanowski J, Dehez F, Round A, Bidon-Chanal A, McSweeney S and Timmins J
An ’open’ structure of the RecOR complex supports ssDNA binding within the core of the complex.
Nucleic Acids Research (2013) 41(16) : 7972-7986

Rennella E and Brutscher B
Fast real-time NMR methods for characterizing short-lived molecular States.
Chemphyschem (2013) 14(13) : 3059-3070

Rennella E, Cutuil T, Schanda P, Ayala I, Gabel F, Forge V, Corazza A, Esposito G and Brutscher B
Oligomeric states along the folding pathways of β2-microglobulin : kinetics, thermodynamics, and structure.
Journal of Molecular Biology (2013) 425(15) : 2722–2736

Repetto D, Aramu S, Boeri Erba E, Sharma N, Jensen ON, Cabodi S, Turco E, Di Stefano P, Defilippi P
_Mapping of p140Cap phosphorylation sites : The EPLYA and EGLYA motifs have a key role in tyrosine phosphorylation and Csk binding, and are substrates of the Abl kinase.
PLoS ONE (2013) 8(1):e54931.

Richichi B, Imberty A, Gillon E, Bosco R, Sutkeviciute I, Fieschi F and Nativi C
Synthesis of a selective inhibitor of a fucose binding bacterial lectin from Burkholderia ambifaria.
Organic and Biomolecular Chemistry (2013) 11(24) : 4086-4094

Ruane KM, Lloyd AJ, Fulop V, Dowson CG, Barreteau H, Boniface A, Dementin S, Blanot D, Mengin-Lecreulx D, Gobec S, Dessen A and Roper DI
Specificity determinants for lysine incorporation in Staphylococcus aureus peptidoglycan as revealed by the structure of a MurE enzyme ternary complex.
Journal of Biological Chemistry (2013) 288(46) : 33439-33448

Rusevich L, Garcìa Sakai V, Franzetti B, Johnson M, Natali F, Pellegrini E, Peters J, Pieper J, Weik M and Zaccai G
Perspectives in biological physics : The nDDB project for a neutron Dynamics Data Bank for biological macromolecules
The European Physical Journal E - Soft Matter and Biological Physics (2013) 36 : 80

Saesen E, Sarrazin S, Laguri C, Sadir R, Maurin D, Thomas A, Imberty A and Lortat-Jacob H
Insights into the mechanism by which Interferon-gamma basic amino acid clusters mediate protein binding to heparan sulfate.
Journal of the American Chemical Society (2013) 135 : 9384−9390

Sanchez-Martinez M, Marcos E, Tauler R, Field M and Crehuet R
Conformational compression and barrier height heterogeneity in the N-acetylglutamate kinase.
The Journal of Physical Chemistry B (2013) 117(46) : 14261-14272

Schiró G
Anharmonic onsets in polypeptides revealed by neutron scattering : Experimental evidences and quantitative description of energy resolution dependence.
Biophysical Chemistry (2013) 180–181 : 29-36

Schneider R, Odronitz F, Hammesfahr B, Hellkamp M and Kollmar M
Peakr : simulating solid-state NMR spectra of proteins.
Bioinformatics (2013) 29(9) : 1134-1140

Schwalbe M, Biernat J, Bibow S, Ozenne V, Jensen MR, Kadavath H, Blackledge M, Mandelkow E and Zweckstetter M
Phosphorylation of human tau protein by microtubule affinity-regulating kinase 2.
_ Biochemistry (2013) 52(50) : 9068-9079

Sele C, Gabel F, Gutsche I, Ivanov I, Burmeister WP, Iseni F and Tarbouriech N
Low-resolution structure of vaccinia virus DNA replication machinery.
Journal of Virology (2013) 87(3) : 1679-1689

Seffouh A, Milz F, Przybylski C, Laguri C, Oosterhof A, Bourcier S, Sadir R, Dutkowski E, Daniel R, van Kuppevelt TH, Dierks T, Lortat-Jacob H, and Vivès RR
HSulf sulfatases catalyse processive and orientated 6-O-desulfation of heparan sulfate that differentially regulate fibroblast growth factor activity.
Faseb Journal (2013) 27 : 2431-2439

Serriere J, Fenel D, Schoehn G, Gouet P and Guillon C
Biophysical characterization of the feline immunodeficiency virus p24 capsid protein conformation and in vitro capsid assembly.
PLoS One (2013) 8(2) : e56424

Sierra A, Zhu Z, Sapay N, Sharotri V, Kline CF, Luczak ED, Subbotina E, Sivaprasadarao A, Snyder PM, Mohler PJ, Anderson ME, Vivaudou M, Zingman LV and Hodgson-Zingman DM
Regulation of cardiac ATP-sensitive potassium channel surface expression by calcium/calmodulin-dependent protein kinase II.
Journal of Biological Chemistry (2013) 288(3) : 1568-1581

Solyom Z, Schwarten M, Geist L, Konrat R, Willbold D and Brutscher B
BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.
Journal of Biomolecular NMR (2013) 55(4) : 311-321

Stadler AM, Unruh T, Namba K, Samatey F and Zaccai G
Correlation between supercoiling and conformational motions of the bacterial flagellar filament.
Biophysical Journal (2013) 105(9) : 2157-2165

Stelter M, Acajjaoui S, McSweeney S and Timmins J
Structural and mechanistic insight into DNA unwinding by Deinococcus radiodurans UvrD.
_ PLoS One (2013) 8(10) : e77364

Szalontai B, Nagy G, Krumova S, Fodor E, Pali T, Taneva SG, Garab G, Peters J and Der A
Hofmeister ions control protein dynamics.
Biochimica and Biophysica Acta-General Subjects (2013) 1830(10) : 4564-4572

Szurgot I, Szolajska E, Laurin D, Lambrecht B, Chaperot L, Schoehn G and Chroboczek J
Self-adjuvanting influenza candidate vaccine presenting epitopes for cell-mediated immunity on a proteinaceous multivalent nanoplatform.
Vaccine (2013) 31(40) : 4338-4346

Takahashi H, Ayala I, Bardet M, De Paepe G, Simorre JP and Hediger S
Solid-state NMR on bacterial cells : Selective cell wall signal enhancement and resolution improvement using dynamic nuclear polarization.
Journal of the American Chemical Society (2013) 135(13) : 5105-5110

Thepaut M, Guzzi C, Sutkeviciute I, Sattin S, Ribeiro-Viana R, Varga N, Chabrol E, Rojo J, Bernardi A, Angulo J, Nieto PM and Fieschi F
Structure of a glycomimetic ligand in the carbohydrate recognition domain of C-type lectin DC-SIGN. structural requirements for selectivity and ligand design.
Journal of the American Chemical Society (2013) 135(7) : 2518-2529

Theveneau P, Baker R, Barrett R, Beteva A, Bowler MW, Carpentier P, Caserotto H, de Sanctis D, Dobias F, Flot D, Guijarro M, Giraud T, Lentini M, Leonard GA, Mattenet M, McCarthy AA, McSweeney SM, Morawe C, Nanao M, Nurizzo D, Ohlsson S, Pernot P, Popov AN, Round A, Royant A, Schmid W, Snigirev A, Surr J and Mueller-Dieckmann C
The Upgrade Programme for the Structural Biology beam lines at the European Synchrotron Radiation Facility - High throughput sample evaluation and automation.
_Journal of Physics Conference Series (2013) 425 : 012001

Thill A, Guiose B, Bacia-Verloop M, Geertsen V and Belloni L
How the diameter and structure of (OH)3Al2O3SixGe1–xOH imogolite nanotubes are controlled by an adhesion versus curvature competition.
The Journal of Physical Chemistry C (2013) 116(51) : 26841-26849

Tosi T, Pflug A, Discola KF, Neves D and Dessen A
Structural basis of eukaryotic cell targeting by type III secretion system (T3SS) effectors.
Research in Microbiology (2013) 164(6) : 605-619

Trapani S and Navaza J
Fourier-space TEM reconstructions with symmetry adapted functions for all rotational point groups.
Journal of Structural Biology (2013) 182(2) : 87-92

Trapp M, Marion J, Tehei M, Deme B, Gutberlet T and Peters J
High hydrostatic pressure effects investigated by neutron scattering on lipid multilamellar vesicles.
Physical Chemistry Chemical Physics (2013) 15(48) : 20951-20956

Triboulet S, Dubée V, Lecoq L, Bougault C, Mainardi JL, Rice LB, Ethève-Quelquejeu M, Gutmann L, Marie A, Dubost L, Hugonnet JE, Simorre JP and Arthur M
Kinetic features of L,D-transpeptidase inactivation critical for β-Lactam antibacterial activity.
PLoS One (2013) 8(7) : e67831

Trovaslet M, Trapp M, Weik M, Nachon F, Masson P, Tehei M and Peters J
Relation between dynamics, activity and thermal stability within the cholinesterase family.
Chemico-Biological Interactions (2013) 203(1) : 14-18

Vauclare P, Bligny R, Gout E and Widmer F
An overview of the metabolic differences between Bradyrhizobium japonicum 110 bacteria and differentiated bacteroids from soybean (Glycine max) root nodules : an in vitro C- and P-nuclear magnetic resonance spectroscopy study.
FEMS Microbiology Letters (2013) 343(1) : 49-56

Varga N, Sutkeviciute I, Guzzi C, McGeagh J, Petit-Haertlein I, Gugliotta S, Weiser J, Angulo J, Fieschi F and Bernardi A
Selective targeting of dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN) with mannose-based glycomimetics : Synthesis and interaction studies of bis(benzylamide) derivatives of a Pseudomannobioside.
Chemistry - A European Journal (2013) 19(15) : 4786-4797

Vijayachandran LS, Thimiri Govinda Raj DB, Edelweiss E, Gupta K, Maier J, Gordeliy V, Fitzgerald DJ and Berger I
Gene gymnastics : Synthetic biology for baculovirus expression vector system engineering.
Bioengineered (2013) 4(5) : 279-287

Volbeda A, Amara P, Iannello M, DeLacey AL, Cavazza C, Fontecilla-Camps JC
Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase.
Chemical Communications (2013) 49 : 7061-7063

Volbeda A, Darnault C, Parkin A, Sargent F, Armstrong FA and Fontecilla-Camps JC
Crystal structure of the O2-tolerant membrane-bound hydrogenase 1 from Escherichia coli in complex with its cognate cytochrome b.
Structure (2013) 21(1) : 184-190

von Loeffelholz O, Knoops K, Ariosa A, Zhang X, Karuppasamy M, Huard K, Schoehn G, Berger I, Shan SO and Schaffitzel C
Structural basis of signal sequence surveillance and selection by the SRP-FtsY complex.
Nature Structural & Molecular Biology (2013) 20(5) : 604-610

Wood K, Gallat F-X, Otten R, van Heel AJ, Lethier M, van Eijck L, Moulin M, Haertlein M, Weik M and Mulder FAA
Protein surface and core dynamics show concerted hydration-dependent activation.
Angewandte Chemie International Edition (2013) 25(2) : 693-696

Yamanaka Y, Zeppieri L, Nicolet Y, Marinoni EN, de Oliveira JS, Odaka M, Dean DR and Fontecilla-Camps JC
Crystal structure and functional studies of an unusual l-cysteine desulfurase from Archaeoglobus fulgidus.
Dalton Transactions (2013) 42 : 3092-3099

Zaccai G
Hydration shells with a pinch of salt.
Biopolymers (2013) 99(4) : 233-238

Zaccai G
The ecology of protein dynamics.
Current Physical Chemistry, Special Issue on Quantum Nanobiology and Biophysical Chemistry (2013) 3(Special Issue) : 9-16

Zervosen A, Zapun A and Frer̀e JM
Inhibition of Streptococcus pneumoniae penicillin-binding protein 2x and Actinomadura R39 DD-peptidase activities by ceftaroline.
Antimicrobial Agents and Chemotherapy (2013) 57(1) : 661-663

Zivanovic Y, Confalonieri F, Ponchon L, Lurz R, Chami M, Flayhan A, Renouard M, Huet A, Decottignies P, Davidson AR, Breyton C and Boulanger P
Insights into bacteriophage T5 structure from the analysis of its morphogenesis genes and protein components.
Journal of Virology (2013) 88(2) : 1162-1174