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Institut de Biologie StructuraleGrenoble / France

Contact person(s) related to this article / PELLEQUER Jean-Luc

Publications since 2015 (IBS/Grenoble)

- Sousa SR, Parot P and Pellequer J-L (2017) Seventh International AFMBioMed Conference on AFM in Life Sciences and Medicine, April 11 to 15, 2016, Porto, Portugal. J. Mol. Recognit. 30 : e2681 (Reprint)

- Giansily-Blaizot M, Chamouni P, Tachon G, Buthiau D, El Jeljal-Abakarim N, Martin-Toutain I and Pellequer J-L (2017) Variants du facteur VII de la coagulation : quelle thromboplastine utiliser pour doser son activité ? Hématologie 23 : 181-187. (Reprint)

- Schillers H, Rianna C, Schäpe J, Luque T, Doschke H, Wälte M, Uriarte JJ, Campillo N, Michanetzis GP, Bobrowska J, Dumitru A, Herruzo ET, Bovio S, Parot P, Galluzzi M, Podestà A, Puricelli L, Scheuring S, Missirlis Y, Garcia R, Odorico M, Teulon J-M, Lafont F, Lekka M, Rico F, Rigato A, Pellequer J-L, Oberleithner H, Navajas D and Radmacher M (2017) Standardized Nanomechanical Atomic force microscopy Procedure (SNAP) for measuring soft and biological samples. Sci. Rep. 7 : 5117.

- Balzergue C, Dartevelle T, Godon C, Laugier E, Meisrimler C, Teulon J-M, Creff A, Bissler M, Brouchoud C, Hagège A, Müller J, Chiarenza S, Javot H, Becuwe-Linka N, David P, Péret B, Delannoy E, Thibaud MC, Armangaud J, Abel S, Pellequer J-L, Nussaume L and Desnos T (2017) Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat. Commun. 8 : 15300.

- Godon C, Teulon J-M, Odorico M, Basset C, Meillan M, Vellutini L, Chen SWW and Pellequer J-L (2017) Conditions to minimize soft single biomolecule deformation when imaging with atomic force microscopy. J. Struct. Biol. 197 : 322-329. (Reprint)

- Costa L, Andriatis A, Brennich M, Teulon J-M, Chen S-wW, Pellequer J-L and Round A (2016) Combined small angle X-ray solution scattering with atomic force microscopy for characterizing radiation damage on biological macromolecules. BMC Struct. Biol. 16 : 18.

- Engler A, Parot P and Pellequer J-L (2016) Sixth International AFMBioMed Conference on AFM in Life Sciences and Medicine, 13-17 December 2014, San Diego, USA. J. Mol. Recognit. 29 : 404-405. (Reprint)

- Chen S-wW, Teulon J-M, Godon C and Pellequer J-L (2016) Atomic Force Microscope, Molecular Imaging, and Analysis. J. Mol. Recogn. 29 : 51–55. (Reprint)

- Gale AJ, Bhat V, Pellequer J-L, Griffin JH, Mosnier L and von Drygalski A (2016) Safety, stability and pharmacokinetic properties of superFVa, a novel engineered coagulation factor V for treatment of severe bleeding. Pharm. Res. 33 : 1517-1526. (Reprint)

- Anicai L, Stoica C, Vladut C, Negru A, Teulon J-M, Odorico M, Pellequer J-L, Parot P and Enachescu M (2015) Synthesis and characterization of a novel screen-printed modified gold electrode with applications in uranyl ions detection. Rev. Chim. 66 : 1639-1644.

Publications 2006-2014 (LIRM/Marcoule)

- Pisani C, Gaillard J-C, Nouvel V, Odorico M, Armengaud J and Prat O (2015) High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells : grasping complex toxicity with a great depth of field. BMC Genomics 16 : 315.

- Chaves RC, Dahmane S, Odorico M, Nicolaes GAF and Pellequer J-L (2014) Factor Va alternative conformation reconstruction using Atomic Force Microscopy. Thromb. Haemost. 112 : 1167-1173. (Reprint)

- Darrouzet E, Lindenthal S, Marcellin D, Pellequer J-L and Pourcher T (2014) The sodium/iodide symporter : state of the art of its molecular characterization. Biochim. Biophys. Acta 1838 : 244-253.

- Gaillard J, Venault L, Calvet R, Del Confetto S, Clavier N, Podor R, Odorico M, Pellequer J-L, Vigier N and Moisy P (2014) Effect of hydration and thermal treatment on ceria surface using non-intrusive techniques. J. Nucl. Mater. 444 : 359–367.

- Gebhardt R, Teulon J-M, Pellequer J-L, Burghammer M, Colletier J-P and Riekel C (2014) Virus particle assembly into crystalline domains enabled by the coffee ring effect. Soft Matter 10 : 5458-5462.

- Meillan M, Ramin M, Buffeteau T, Marsaudon S, Odorico M, Chen S-wW, Pellequer J-L, Degueil M, Heuze K, Vellutini L and Bennetau B (2014) Self-Assembled Monolayer for AFM Measurements of Tobacco Mosaic Virus (TMV) at the Atomic Level. RCS Adv. 4 : 11927-11930. (Reprint)

- Mourey G, Tachon G, Pellequer J-L, Zawadzki C, Trossaërt M, Bertrand M-A, Schved J-F and Giansily-Blaizot M (2014) A new Haut-Doubs FVII variant depending on species derived-thromboplastin reagent (F7:p.Arg337His). Haemophilia 20 : e336-e358.

- Alonso B, Beraud C, Meguellati S, Chen S-wW, Pellequer J-L, Armengaud J and Godon C (2013) Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN. Cell Cycle 12 : 463-472. (Reprint)

- Bahassou-Benamri R, Davin A-H, Gaillard J-C, Alonso B, Odorico M, Pible O, Armengaud J and Godon C (2013) Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress. Yeast 30 : 353-363.

- Borhany M, Boijout H, Pellequer J-L, Shamsi T, Moulis G, Aguilar-Martinez P, Schved JF and Giansily-Blaizot M (2013) Genotype and phenotype relationships in ten Pakistani unrelated patients with inherited FVII deficiency. Haemophilia 19 : 893-897.

- Chaves RC and Pellequer J-L (2013) DockAFM : benchmarking protein structures by docking under AFM topographs. Bioinformatics 29 : 3230-3231. (Reprint)

- Chaves RC, Teulon J-M, Odorico M, Parot P, Chen S-wW and Pellequer J-L (2013) Conformational dynamics of individual antibodies using computational docking and AFM. J. Mol. Recognit. 26 : 596-604. (Reprint)

- Chen S-wW, Odorico M, Meillan M, Vellutini L, Teulon J-M, Parot P, Bennetau B and Pellequer J-L (2013) Nanoscale structural features determined by AFM for single virus particles. Nanoscale 22 : 10877-10886. (Reprint)

- Chen S-wW and Pellequer J-L (2013) Adepth : new representation and its implications for atomic depths of macromolecules. Nucleic Acid. Res. 41 : W412-W416. (Reprint)

- Makky A, Viel P, Berthelot T, Chen S-wW, Pellequer J-L and Polesel-Maris J (2013) Piezoelectric tuning fork probe for AFM imaging and specific recognition force spectroscopy of an enzyme and its ligand. J. Mol. Recognit. 26 : 521-531. (Reprint)

- Thullier P, Avril A, Mathieu J, Behrens CK, Pellequer J-L and Pelat T (2013) Mapping the epitopes of a neutralizing antibody fragment directed against the lethal factor of bacillus anthracis and cross-reacting with the homologous edema factor. PLoS ONE 8 : e65855.

- Ciofani G, Danti S, Genchi GG, D’Alessandro D, Pellequer J-L, Odorico M, Mattoli V and Giorgi M (2012) Pilot in vivo toxicological investigation of boron nitride nanotubes. Int. J. Nanomed. 7 : 19-24.

- Plantier J-L, Saboulard D, Heinrich L, Pellequer J-L, Négrier C and Delcourt M (2012) Functional mapping of the A2 domain from human factor VIII. Thromb. Haemost. 107 : 315-327. (Reprint)

- Trinh M-H, Odorico M, Pique ME, Teulon J-M, Roberts VA, Ten Eyck LF, Getzoff ED, Parot P, Chen S-wW and Pellequer J-L (2012) Computational reconstruction of multidomain proteins using atomic force microscopy data. Structure 20 : 113-120. (Reprint)

- Chen S-wW and Pellequer J-L (2011) DeStripe : frequency-based algorithm for removing stripe noises from AFM images. BMC Struct. Biol. 11 : 7.

- Lin C, Chinnappan R, Acharya K, Pellequer J-L and Jankowiak R (2011) On stabilization of a neutral aromatic ligand by π-cation interactions in monoclonal antibodies. Biophys. Chem. 154 : 35-40. (Reprint)

- Pellequer J-L, Chen S-wW, Saboulard D, Delcourt M, Négrier C and Plantier J-L (2011) Functional mapping of factor VIII C2 domain. Thromb. Haemost. 106 : 121-131. (Reprint)

- Teulon J-M, Delcuze Y, Odorico M, Chen S-wW, Parot P and Pellequer J-L (2011) Single and multiple bonds in (strept)avidin-biotin interactions. J. Mol. Recognit. 24 : 490-502. (Reprint)

- Trinh M-H, Odorico M, Bellanger L, Jacquemond M, Parot P and Pellequer J-L (2011) Tobacco mosaic virus as an AFM tip calibrator. J. Mol. Recognit. 24 : 503-510. (Reprint)

- Pible O, Vidaud C, Plantevin S, Pellequer J-L and Quemeneur E (2010) Predicting the disruption by UO(2) (2+) of a protein-ligand interaction. Protein Sci. 19 : 2219-2230. (Reprint)

- Chen S-wW, Van Regenmortel MH and Pellequer J-L (2009) Structure-activity relationships in peptide-antibody complexes : implications for epitope prediction and development of synthetic peptide vaccines. Curr. Med. Chem. 16 : 953-964. (Reprint)

- Dedieu A, Berenguer F, Basset C, Prat O, Quemeneur E, Pible O and Vidaud C (2009) Identification of uranyl binding proteins from human kidney-2 cell extracts by immobilized uranyl affinity chromatography and mass spectrometry. J. Chromatogr. A 1216 : 5365-5376.

- Teulon JM, Parot P, Odorico M and Pellequer J-L (2008) Deciphering the energy landscape of the interaction uranyl-DCP with antibodies using dynamic force spectroscopy. Biophys. J. 95 : L63-L65. (Reprint)

- Gale AJ, Yegneswaran S, Xu X, Pellequer J-L and Griffin JH (2007) Characterization of a factor Xa binding site on factor Va near the Arg506 APC cleavage site. J. Biol. Chem. 282 : 21848–21855. (Reprint)

- Greenbaum JA, Andersen PH, Blythe M, Bui H-H, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer J-L, Pinilla C, Ponomarenko JV, Raghava GPS, van Regenmortel MHV, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M and Peters B (2007) Towards a consensus on datasets and evaluation metrics for developing B cell epitope prediction tools. J. Mol. Recognit. 20 : 75-82. (Reprint)

- Odorico M, Teulon J-M, Bellanger L, Vidaud C, Bessou T, Chen S-wW, Quemeneur E, Parot P and Pellequer J-L (2007) Energy landscape of chelated uranyl - antibody interactions by Dynamic Force Spectroscopy. Biophys. J. 93 : 645-654. (Reprint)

- Odorico M, Teulon JM, Berthoumieu O, Chen S-wW, Parot P and Pellequer J-L (2007) An integrated methodology for data processing in Dynamic Force Spectroscopy of ligand-receptor binding. Ultramicroscopy 107 : 887-894. (Reprint)

- Parot P, Dufrene YF, Hinterdorfer P, Le Grimellec C, Navajas D, Pellequer J-L and Scheuring S (2007) Past, present and future of atomic force microscopy in life sciences and medicine. J. Mol. Recognit. 20 : 418-431. (Reprint)

- Rossi C, Briand E, Parot P, Odorico M and Chopineau J (2007) Surface response methodology for the study of supported membrane formation. J. Phys. Chem. B 111 : 7567-7576.

- Teulon J-M, Odorico M, Chen S-wW, Parot P and Pellequer J-L (2007) On molecular recognition of an uranyl chelate by monoclonal antibodies. J. Mol. Recognit. 20 : 508-515. (Reprint)

- Tzvetkova-Chevolleau T, Hutin C, Noel LD, Goforth R, Carde JP, Caffarri S, Sinning I, Groves M, Teulon J-M, Hoffman NE, Henry R, Havaux M and Nussaume L (2007) Canonical signal recognition particle components can be bypassed for posttranslational protein targeting in chloroplasts. Plant Cell 19 : 1635-1648.

- Vidaud C, Gourion-Arsiquaud S, Rollin-Genetet F, Torne-Celer C, Plantevin S, Pible O, Berthomieu C and Quemeneur E (2007) Structural consequences of binding of UO2(2+) to apotransferrin : can this protein account for entry of uranium into human cells ? Biochemistry 46 : 2215-2226.

- Gale AJ, Radtke K-P, Cunningham MA, Chamberlain D, Pellequer J-L and Griffin JH (2006) Intrinsic stability and functional properties of disulfide bond-stabilized coagulation factor VIIIa variants. J. Thromb. Haemost. 4 : 1315-1322. (Reprint)

- Pellequer J-L and Chen S-wW (2006) Multi-template approach to modeling engineered disulfide bonds. Proteins 65 : 192-202. (Reprint)

- Pible O, Guilbaud P, Pellequer J-L, Vidaud C and Quéméneur E (2006) Structural insights into protein-uranyl interaction : towards an in-silico detection method. Biochimie 88 : 1631-1638.

Publications 2001-2005 (SBTN, ValRhô)

- Pellequer J-L, Chen S-wW, Keum Y-s, Karu AE, Li QX and Roberts VA (2005)Structural basis for preferential binding of non-ortho-substituted polychlorinated biphenyls by the monoclonal antibody S2B1. J. Mol. Recognit. 18 : 282-294. (Reprint)

- Pible O, Imbert G and Pellequer J-L (2005) INTERALIGN : interactive alignment editor for distantly related protein sequences. Bioinformatics 21 : 3166-3167. (Reprint)

- Armengaud J, Dedieu A, Solques O, Pellequer J-L and Quemeneur E (2005) Deciphering structure and topology of conserved COG2042 orphan proteins. BMC Struct. Biol. 5 : 3.

- Alric J, Yoshida M, Nagashima KVP, Hienerwadel R, Parot P, Verméglio A, Chen S-wW and Pellequer J-L (2004) Two distinct binding sites for HiPIP and cytochrome c on the reaction center-bound cytochrome of Rubrivivax gelatinosus. J. Biol. Chem. 279 : 32545-32553. (Reprint)

- Chen S-wW and Pellequer J-L (2004) Identification of functionally important residues in proteins using comparative models. Curr. Med. Chem. 11 : 595-605. (Reprint)

- Gale AJ and Pellequer J-L (2003) An engineered interdomain disulfide bond stabilizes human blood coagulation factor VIIIa. J. Thromb. Haemost. 1 : 1966-1971. (Reprint)

- Giansily-Blaizot M, Chen S-wW, Schved J-F and Pellequer J-L (2003) Les mécanismes d’activation du facteur VII de la coagulation : nouvelles approches et perspectives. Hématologie 9 : 125-131.

- Odorico M and Pellequer J-L (2003) BEPITOPE : predicting the location of continuous epitopes and patterns in proteins. J. Mol. Recogn. 16 : 20-22. (Reprint)

- Armengaud J, Fernandez B, Chaumont V, Rollin-Genetet F, Finet S, Marchetti C, Myllykallio H, Vidaud C, Pellequer J-L, Gribaldo S, Forterre P and Gans P (2003) Identification, purification and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (CoenzymeA biosynthetic pathway) in the hyperthermophilic archaeon pyrococcus abyssi. J. Biol. Chem. 278 : 31078-31087.

- Chen S-wW, Pellequer J-L, Schved J-F and Giansily-Blaizot M (2002) Model of a ternary complex between activated factor VII, tissue factor and factor IX. Thromb. Haemost. 88 : 74-82. (Reprint)

- Coulon S, Pellequer J-L, Blachère T, Chartier M, Mappus E, Chen S-wW, Cuilleron C-Y and Baty D (2002) Unusual role of an antibody VL domain in estradiol recognition. J. Mol. Recognit. 15 : 6-18.

- Gale AJ, Xu X, Pellequer J-L, Getzoff ED and Griffin JH (2002) Interdomain engineering disulfide bond permitting elucidation of mechanisms of inactivation of coagulation factor Va by activated protein C. Protein Sci. 11 : 2091-2101.

- Menetrey J, Flatau G, Stura EA, Charbonnier JB, Gas F, Teulon J-M, Le Du MH, Boquet P and Menez A (2002) NAD binding induces conformational changes in Rho ADP-ribosylating clostridium botulinum C3 exoenzyme. J. Biol. Chem. 277 : 30950-30957.

Publications 1995-2001 (TSRI, La Jolla)

- Hsiung YG, Chang HC, Pellequer J-L, LaValle R and Wittenberg C (2001) The F-box protein Grr1 interacts with phosphorylated targets via the cationic surface of its Leucine-Rich Repeat. Mol. Cell Biol. 21 : 2506-2520. (Reprint)

- Pellequer J-L, Chen S-wW, Feeney AJ, Zhao B, Kao H-I, Karu AE, Li K, Li QX and Roberts VA (2001) Architecture of antibody binding sites for polunuclear aromatic hydrocarbons. Nuclear Site Remediation. First accomplishments of the environmental management science program. Eller PG and Heineman WR, American Chemical Society. 778 : 398-416.

- Gale AJ, Pellequer J-L, Getzoff ED and Griffin JH (2000) Structural basis for hemophilia A caused by mutations in the C domains of blood coagulation factor VIII. Thromb. Haemost. 83 : 78-85. (Reprint)

- Pellequer J-L, Gale AJ and Getzoff ED (2000) Blood coagulation : The outstanding hydrophobic residues. Curr. Biol. 10 : R237-R240. (Reprint)

- Pellequer J-L, Gale AJ, Getzoff ED and Griffin JH (2000) Three-dimensional model of the coagulation factor Va bound to activated protein C. Thromb. Haemost. 84 : 849-857. (Reprint)

- Pellequer J-L, Zhao B, Kao H-I, Bell CW, Li K, Li QX, Karu AE and Roberts VA (2000) Stabilization of bound polycyclic aromatic hydrocarbons by a pi-cation interaction. J. Mol. Biol. 302 : 691-699. (Reprint)

- Pellequer J-L, Brudler R and Getzoff ED (1999) Biological sensors : More than one way to sense oxygen. Curr. Biol. 9 : R416-R418. (Reprint)

- Pellequer J-L, Chen S-wW, Roberts VA, Tainer JA and Getzoff ED (1999) Unraveling the effect of changes in conformation and compactness at the antibody VL-VH interface upon antigen binding. J. Mol. Recognit. 12 : 267-275. (Reprint)

- Pellequer J-L, Gale AJ, Griffin JH and Getzoff ED (1998) Homology models of the C domains of blood coagulation factors V and VIII : A proposed membrane binding mode for FV and FVIII C2 domains. Blood Cells Mol. Dis. 24 : 448-461. (Reprint)

- Pellequer J-L, Wager-Smith KA, Kay SA and Getzoff ED (1998) Photoactive yellow protein : A structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc. Natl. Acad. Sci. USA 95 : 5884-5890. (Reprint)

- Coombs GS, Bergstrom RC, Pellequer J-L, Baker SI, Navre M, Tainer JA, Madison EL and Corey DR (1998) Substrate specificity of Prostate-specific antigen (PSA). Chem. Biol. 5 : 475-488. (Reprint)

- Pellequer J-L and Chen S-wW (1997) Does conformational free energy distinguish loop conformations in proteins ? Biophys. J. 73 : 2359-2375. (Reprint)

Publications 1993-1995 (Columbia University, New York)

- Van Regenmortel MHV, Altschuh D, Pellequer J-L, Richalet-Sécordel P, Saunal H, Wiley JA and Zeder-Lutz G (1994) Analysis of viral antigens using biosensor technology. Methods 6 : 177-187. (Reprint)

- Van Regenmortel MHV and Pellequer J-L (1994) Predicting antigenic determinants in proteins : looking for unidimensional solutions to a three-dimensional problem ? Peptide Res. 7 : 224-228. (Reprint)

- Tanzi RE, Petrukhin K, Chernov I, Pellequer J-L, Wasco W, Ross B, Romano DM, Parano E, Pavone L, Brzustowicz LM, Devoto M, Peppercorn J, Bush AI, Sternlieb I, Pirastu M, Gusella JF, Evgrafov O, Penchaszadeh GK, Honig B, Edelman IS, Soares MB, Scheinberg IH and Gilliam TC (1993) The Wilson disease gene is a copper transporting ATPase with homology to the Menkes disease gene. Nat. Genet. 5 : 344-350. (Reprint)

Publications 1991-1993 (IBMC, Strasbourg)

- Pellequer J-L and Van Regenmortel MHV (1993) Affinity of monoclonal antibodies to large multivalent antigens : influence of steric hindrance on antibody affinity constants calculated from Scatchard plots. Mol. Immunol. 30 : 955-958. (Reprint)

- Pellequer J-L and Van Regenmortel MHV (1993) Measurement of kinetic binding constants of viral antibodies using a new biosensor technology. J. Immunol. Meth. 166 : 133-143. (Reprint)

- Pellequer J-L, Westhof E and Van Regenmortel MHV (1993) Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol. Lett. 36 : 83-100. (Reprint)

- Pellequer J-L and Westhof E (1993) PREDITOP : a program for antigenicity predictions. J. Mol. Graph. 11 : 204-210. (Reprint)

- Azimzadeh A, Pellequer J-L and Van Regenmortel MHV (1992) Operational aspects of antibody affinity constants measured by liquid-phase and solid-phase assays. J. Mol. Recognit. 5 : 9-18. (Reprint)

- Pellequer J-L, Westhof E and Van Regenmortel MHV (1991) Predicting the location of continuous epitopes in proteins from their primary structures. Methods Enzymol. 203 : 176-201. (Reprint)