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	<title>IBS - Institut de Biologie Structurale - Grenoble / France</title>
	<link>https://www.ibs.fr/</link>
	<description>L'Institut de Biologie Structurale a pour mission le d&#233;veloppement de recherches en biologie structurale, comportant l'&#233;tude structurale et fonctionnelle des macromol&#233;cules biologiques, notamment des prot&#233;ines.</description>
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		<title>IBS - Institut de Biologie Structurale - Grenoble / France</title>
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		<title>Members</title>
		<link>https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/anaerobic-conditions-freezing-grids/members</link>
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		<dc:date>2022-11-22T10:32:24Z</dc:date>
		<dc:format>text/html</dc:format>
		<dc:language>en</dc:language>
		<dc:creator>NEUMANN Emmanuelle</dc:creator>



		<description>
&lt;p&gt;Team members involved: Daphna Fenel, Emmanuelle Neumann, Guy Schoehn&lt;/p&gt;


-
&lt;a href="https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/anaerobic-conditions-freezing-grids/" rel="directory"&gt;Anaerobic conditions freezing grids&lt;/a&gt;


		</description>


 <content:encoded>&lt;img src='https://www.ibs.fr/local/cache-vignettes/L150xH73/anae_ro-team-3fd69.png?1688675040' class='spip_logo spip_logo_right' width='150' height='73' alt=&#034;&#034; /&gt;
		&lt;div class='rss_texte'&gt;&lt;p&gt;&lt;strong&gt;Team members involved&lt;/strong&gt;: Daphna Fenel, Emmanuelle Neumann, &lt;strong&gt;Guy Schoehn&lt;/strong&gt;&lt;/p&gt;&lt;/div&gt;
		
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<item xml:lang="en">
		<title>Members</title>
		<link>https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/tomography-cryo-fib-sem/members</link>
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		<dc:date>2022-11-21T15:25:46Z</dc:date>
		<dc:format>text/html</dc:format>
		<dc:language>en</dc:language>
		<dc:creator>NEUMANN Emmanuelle</dc:creator>



		<description>
&lt;p&gt;Team members involved : Elda Bauda, Alessio D'acapito, Leandro Estrozi, Benoit Gallet, Christine Moriscot, Emmanuelle Neumann&lt;/p&gt;


-
&lt;a href="https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/tomography-cryo-fib-sem/" rel="directory"&gt;Tomography / Cryo-FIB SEM&lt;/a&gt;


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		&lt;div class='rss_texte'&gt;&lt;p&gt;&lt;strong&gt;Team members involved&lt;/strong&gt; : Elda Bauda, Alessio D'acapito, Leandro Estrozi, Benoit Gallet, Christine Moriscot, Emmanuelle Neumann&lt;/p&gt;&lt;/div&gt;
		
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<item xml:lang="en">
		<title>Members</title>
		<link>https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/analyse-d-images-de-cryo-me/members</link>
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		<dc:date>2022-11-21T10:07:11Z</dc:date>
		<dc:format>text/html</dc:format>
		<dc:language>en</dc:language>
		<dc:creator>NEUMANN Emmanuelle</dc:creator>



		<description>
&lt;p&gt;Team member involved: Leandro Estrozi&lt;/p&gt;


-
&lt;a href="https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/analyse-d-images-de-cryo-me/" rel="directory"&gt;Cryo-EM image analysis&lt;/a&gt;


		</description>


 <content:encoded>&lt;img src='https://www.ibs.fr/local/cache-vignettes/L103xH150/leandro-0a8c2.png?1688802051' class='spip_logo spip_logo_right' width='103' height='150' alt=&#034;&#034; /&gt;
		&lt;div class='rss_texte'&gt;&lt;p&gt;&lt;strong&gt;Team member involved&lt;/strong&gt;: Leandro Estrozi&lt;/p&gt;&lt;/div&gt;
		
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		<title>Biological samples</title>
		<link>https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/tomography-cryo-fib-sem/biological-samples-en</link>
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		<dc:date>2022-11-10T15:51:34Z</dc:date>
		<dc:format>text/html</dc:format>
		<dc:language>en</dc:language>
		<dc:creator>NEUMANN Emmanuelle</dc:creator>



		<description>
&lt;p&gt;Several biological objects are currently studied in the team by cryo-electron tomography and cryo-FIB SEM. &lt;br class='autobr' /&gt;
Bacteriophage T5 /Proteo-liposome + FhuA &lt;br class='autobr' /&gt; Infection of E. coli by bacteriophage T5 is initiated by irreversible binding to its bacterial receptor, the outer membrane transporter FhuA. This interaction triggers the opening of the capsid, the perforation of the bacterial wall and the injection of DNA into the host cytoplasm. When this interaction takes place in vitro (when FhuA is (&#8230;)&lt;/p&gt;


-
&lt;a href="https://www.ibs.fr/en/research/assembly-dynamics-and-reactivity/methods-and-electron-microscopy-group-g-schoehn/schoehn-team/methodologie/tomography-cryo-fib-sem/" rel="directory"&gt;Tomography / Cryo-FIB SEM&lt;/a&gt;


		</description>


 <content:encoded>&lt;img src='https://www.ibs.fr/local/cache-vignettes/L150xH143/bb8-phaget5-49ee6.png?1688802051' class='spip_logo spip_logo_right' width='150' height='143' alt=&#034;&#034; /&gt;
		&lt;div class='rss_texte'&gt;&lt;p&gt;Several biological objects are currently studied in the team by cryo-electron tomography and cryo-FIB SEM.&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;Bacteriophage T5 /Proteo-liposome + FhuA&lt;/strong&gt;&lt;/p&gt;
&lt;div class='spip_document_6377 spip_document spip_documents spip_document_image spip_documents_right spip_document_right spip_document_avec_legende' data-legende-len=&#034;79&#034; data-legende-lenx=&#034;xx&#034;
&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH475/bb8-phaget5-3f200.png?1688802051' width='500' height='475' alt='' /&gt;
&lt;figcaption class='spip_doc_legende'&gt; &lt;div class='spip_doc_titre crayon document-titre-6377 '&gt;&lt;strong&gt;Bacteriophage T5 / Prot&#233;o-liposome + FhuA
&lt;/strong&gt;&lt;/div&gt; &lt;div class='spip_doc_descriptif crayon document-descriptif-6377 '&gt;Collaboration C. Breyton
&lt;/div&gt; &lt;div class='spip_doc_credits crayon document-credits-6377 '&gt;E. Neumann
&lt;/div&gt;
&lt;/figcaption&gt;&lt;/figure&gt;
&lt;/div&gt;
&lt;p&gt;Infection of E. coli by bacteriophage T5 is initiated by irreversible binding to its bacterial receptor, the outer membrane transporter &lt;strong&gt;FhuA&lt;/strong&gt;. This interaction triggers the opening of the capsid, the perforation of the bacterial wall and the injection of DNA into the host cytoplasm. When this interaction takes place in vitro (when FhuA is reconstituted into liposomes for example) all the phage DNA is ejected. &lt;br class='autobr' /&gt;
Initially tilted sets of FhuA-Liposomes + T5 were collected on the GLACIOS cryo-microscope (Thermo Scientific) at the IBS. &lt;br class='autobr' /&gt;
Subsequently, a new collection was performed on the Titan Krios G3 cryo-microscope (EMBL Heidelberg, Germany) allowing the reconstruction of more than 100 tomograms in which several sub-volumes corresponding to the liposome perforation by T5 can be extracted.&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;Tomogram slices&lt;/strong&gt; :&lt;/p&gt;
&lt;ul class=&#034;spip_documents_ligne&#034;&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0033&#034;&gt; &lt;div class=&#034;spip_document_6379 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/101.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH498/101-d9526.png?1688802051' width='500' height='498' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0054&#034;&gt; &lt;div class=&#034;spip_document_6380 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/102.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH497/102-e30c6.png?1688802052' width='500' height='497' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0065&#034;&gt; &lt;div class=&#034;spip_document_6381 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/103.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH497/103-d91bd.png?1688802052' width='500' height='497' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0076&#034;&gt; &lt;div class=&#034;spip_document_6382 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/104.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH496/104-c7d66.png?1688802052' width='500' height='496' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0044&#034;&gt; &lt;div class=&#034;spip_document_6383 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/105.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH498/105-7b0fa.png?1688802052' width='500' height='498' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;/br &gt;&lt;/p&gt;
&lt;ul class=&#034;spip_documents_ligne&#034;&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0033&#034;&gt; &lt;div class=&#034;spip_document_6384 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/106.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH498/106-6dcac.png?1688802053' width='500' height='498' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0033&#034;&gt; &lt;div class=&#034;spip_document_6385 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/107.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH498/107-011f2.png?1688802053' width='500' height='498' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0011&#034;&gt; &lt;div class=&#034;spip_document_6386 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/108.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH499/108-970a3.png?1688802053' width='500' height='499' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0022&#034;&gt; &lt;div class=&#034;spip_document_6387 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/109.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH499/109-50088.png?1688802053' width='500' height='499' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt; &lt;li class=&#034;spip_documents_ligne__doc&#034; style=&#034;flex: 1.0022&#034;&gt; &lt;div class=&#034;spip_document_6388 spip_document spip_documents spip_document_image spip_documents_center spip_document_center spip_lien_ok&#034;&gt;
&lt;figure class=&#034;spip_doc_inner&#034;&gt; &lt;a href='https://www.ibs.fr/IMG/png/110.png' class=&#034;spip_doc_lien mediabox&#034; type=&#034;image/png&#034;&gt; &lt;img src='https://www.ibs.fr/local/cache-vignettes/L500xH499/110-0f3b3.png?1688802054' width='500' height='499' alt='' /&gt;&lt;/a&gt;
&lt;/figure&gt;
&lt;/div&gt;	&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;strong&gt;Used reconstruction software&lt;/strong&gt;:&lt;br class='autobr' /&gt;
ETomo, EMAN2, Warp/M, AreTomo&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;For sub-tomogram averaging, several software packages are being tested&lt;/strong&gt;:&lt;br class='autobr' /&gt;
PEET, EMAN2, RELION 4&lt;/p&gt;&lt;/div&gt;
		
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