Publications since 2014

Our list of publications with peerReviewing, books and book sections since 2014 can be found below (data issued from HAL-IBS).
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Publications up to 2013

Our list of publications from 2000 to 2013 is displayed below.

Publications 2013

Büldt G, Gordeliy V, Klare JP, Engelhard M
Sensory Rhodopsin II : Signal Development and Transduction
Encyclopedia of Biophysics (2013) : 2312-2315

Gushchin I, Chervakov P, Kuzmichev P, Popov AN, Round E, Borshchevskiy V, Ishchenko A, Petrovskaya L, Chupin V, Dolgikh DA, Arseniev AA, Kirpichnikov M and Gordeliy V
Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria.
Proceedings of the National Academy of Sciences (2013) 110(31) : 12631-12636

Gushchin I, Gordeliy V and Grudinin S
Two distinct states of the HAMP domain from sensory rhodopsin transducer observed in unbiased molecular dynamics simulations.
PLoS One (2013) 8(7) : e66917

Ishchenko A, Round E, Borshchevskiy V, Grudinin S, Gushchin I, Klare JP, Balandin T, Remeeva A, Engelhard M, Büldt G and Gordeliy V
Ground state structure of D75N mutant of sensory rhodopsin II in complex with its cognate transducer.
Journal of Photochemistry and Photobiology B : Biology (2013) 123(5) : 55-58

Vijayachandran LS, Thimiri Govinda Raj DB, Edelweiss E, Gupta K, Maier J, Gordeliy V, Fitzgerald DJ and Berger I
Gene gymnastics : Synthetic biology for baculovirus expression vector system engineering.
Bioengineered (2013) 4(5) : 279-287

Publications 2012

Blesneac I, Ravaud S, Juillan-Binard C, Barret L-A, Zoonens M, Polidori A, Miroux B, Pucci B and Pebay-Peyroula E
Production of UCP1 a membrane protein from the inner mitochondrial membrane using the cell free expression system in the presence of a fluorinated surfactant.
Biochimica et Biophysica Acta (BBA) - Biomembranes (2012) 1818(3) : 798-805

Blesneac I, Ravaud S, Machillot P, Zoonens M, Masscheylen S, Miroux B, Vivaudou M and Pebay-Peyroula E
Assaying the proton transport and regulation of UCP1 using solid supported membranes.
European Biophysics Journal (2012) 41(8) : 675-679

Deniaud A, Panwara P, Frelet-Barrand A, Bernaudat F, Julian-Binard C, Ebel C, Rolland N and Pebay-Peyroula E
Oligomeric status and nucleotide binding properties of the chloroplast ATP/ADP transporter 1 : towards a molecular understanding of the transport mechanism.
PLoS One (2012) 7(3) : e32325

Gushchin IY, Gordeliy VI and Grudinin S
A novel dimerization interface of cyclic nucleotide binding domain, which is disrupted in presence of cAMP : implications for CNG channels gating.
Journal of Molecular Modeling (2012) 18(9) : 4053-4060

Panwar P, Deniaud A and Pebay-Peyroula E
Contamination from affinity column : Encounter with a new villain in the world of membrane protein crystallization.
Acta Crystallographica D Biological Crystallography (2012) 68(10) : 1272-1277

Ravaud S, Bidon-Chanal A, Blesneac I, Machillot P, Juillan-Binard C, Dehez F, Chipot C and Pebay-Peyroula E
Impaired transport of nucleotides in a mitochondrial carrier explains severe human genetic diseases.
ACS Chemical Biology (2012) 7(7) : 1164-1169

Publications 2011

Borshchevskiy VI, Round ES, Popov AN, Buldt G and Gordeliy VI
X-ray-radiation-induced changes in bacteriorhodopsin structure.
Journal of Molecular Biology (2011) 409 (5) : 813-825

Deniaud A, Bernaudat F, Frelet-Barrand A, Juillan-Binard C, Vernet T, Rolland N and Pebay-Peyroula E
Expression of a chloroplast ATP/ADP transporter in E. coli membranes : Behind the Mistic strategy.
Biochimica and Biophysica Acta - Biomembranes (2011) 1808 (8) : 2059-2066

Dupeux F, Rower M, Seroul G, Blot D and Marquez J, A
A thermal stability assay can help to estimate the crystallization likelihood of biological samples.
_ Acta Crystallographica Section D-Biological Crystallography (2011) 67 : 915-919

Garcia-Saez I, Lacroix F, Blot D, Gabel F and Skoufias DA
Structural characterization of HBXIP : The protein that interacts with the anti-apoptotic protein survivin and the oncogenic viral protein HBx.
Journal of Molecular Biology (2011) 405(2) : 331-340

Gushchin IY, Gordeliy VI and Grudinin S
Role of the HAMP domain region of sensory rhodopsin transducers in signal transduction.
Biochemistry (2011) 50 (4) : 574-580

Gushchin I, Reshetnyak A, Borshchevskiy V, Ishchenko A, Round E, Grudinin S, Engelhard M, Büldt G and Gordeliy V
Active state of sensory rhodopsin II : Structural determinants for signal transfer and proton pumping.
Journal of Molecular Biology (2011) 412 (4) : 591-600

Ling WL, Biro A, Bally I, Tacnet P, Deniaud A, Doris E, Frachet P, Schoehn G, Pebay-Peyroula E and Arlaud GJ
Proteins of the innate immune system crystallize on carbon nanotubes but are not activated.
ACS Nano (2011) 5 (2) : 730-737

Murugova TN, Solodovnikova IM, Yurkov VI, Gordeliy VI, Kuklin AI, Ivankov OI, Kovalev YS, Popov VI, Teplova VV and Yaguzhinsky LS
Potentials of small-angle neutron scattering for studies of the Structure of “Live” Mitochondria”.
Neutron News (2011) 22 : 11-14

Solov’ev DV, Kuklin AI, Utrobin PK, Ozerin AN, Kurkin TS, Ivan’kov OI, Bulavin LA and Gordeliy VI
X-ray scattering and volumetric P-V-T studies of the dimyristoylphosphatidylcholine-water system.
Journal of Surface Investigation : X-ray, Synchrotron and Neutron
(2011) 5(1) : 7-10

Publications 2010

Borshchevskiy V, Efremov R, Moiseeva E, Buldt G and Gordeliy V
Overcoming merohedral twinning in crystals of bacteriorhodopsin grown in lipidic mesophase.
Acta Crystallographica D Biological Crystallography (2010) 66(Pt 1) : 26-32

Borshchevskiy V, Moiseeva E, Kuklin A, Buldt G, Hato M and Gordeliy V
Isoprenoid-chained lipid beta-XylOC(16+4)-A novel molecule for in meso membrane protein crystallization.
Journal of Crystal Growth (2010) 312(22) : 3326-3330

Bulavin LA, Gordeliy VI, Ivan’kov OI, Islamov AK and Kuklin AI
Neutron studies of the NaBr impurity influence on micelle formation in the heay water-tetradecyltrimethylammonium bromide systems.
Ukrainian Journal of Physics (2010) 55(3) : 288-292

Deniaud A, Liguori L, Blesneac I, Lenormand JL and Pebay-Peyroula E
Crystallization of the membrane protein hVDAC1 produced in cell-free system.
Biochimica et Biophysica Acta (BBA) - Biomembranes (2010) 1798(8) : 1540-1546

Deniaud A, Moiseeva E, Gordeliy V and Pebay-Peyroula E
Crystallography of membrane proteins : from crystallization to structure.
Methods in Molecular Biology (2010) 654 : 79-103

Durand D, Vives C, Cannella D, Perez J, Pebay-Peyroula E, Vachette P and Fieschi F
NADPH oxidase activator p67(phox) behaves in solution as a multidomain protein with semi-flexible linkers.
Journal of Structural Biology (2010) 169 : 45-53

Falk S, Ravaud S, Koch J and Sinning I
The C terminus of the Alb3 membrane insertase recruits cpSRP43 to the thylakoid membrane.
Journal of Biological Chemistry (2010) 285(8) : 5954-5962

Frelet-Barrand A, Boutigny S, Moyet L, Deniaud A, Seigneurin-Berny D, Salvi D, Bernaudat F, Richaud P, Pebay-Peyroula E, Joyard J and Rolland N
Lactococcus lactis, an alternative system for functional expression of peripheral and intrinsic Arabidopsis membrane proteins.
PLoS One (2010) 5(1) : e8746

Gushchin IY, Gordeliy VI and Grudinin S
Role of the HAMP Domain Region of Sensory Rhodopsin Transducers in Signal Transduction.
Biochemistry (2010) :

Nury H, Blesneac I, Ravaud S and Pebay-Peyroula E
Structural approaches of the mitochondrial carrier family.
Methods in Molecular Biology (2010) 654 : 105-117

Radzimanowski J, Ravaud S, Schott A, Strahl S and Sinning I
Cloning, recombinant production, crystallization and preliminary X-ray diffraction analysis of SDF2-like protein from Arabidopsis thaliana.
Acta Crystallographica Section F-Structural Biology and Crystallization Communications (2010) 66(Pt 1) : 12-14

Rogachev AV, Kuklin AI, Cherny AY, Ozerin AN, Muzafarov AM, Tatarinova EA and Gordeliy VI
Structure of organosilicon dendrimers of higher generations.
Physics of the Solid State (2010) 52(5) : 1045-1049

Publications 2009

Boesecke P, Bois JM, Crepin T, Hunte C, Kahn R, Kao WC, Nauton L, Winther AM, Moller J, Nissen P, Nury H, Olesen C, Pebay-Peyroula E, Vicat J and Stuhrmann H
A first low-resolution difference Fourier map of phosphorus in a membrane protein from near-edge anomalous diffraction.
Journal of Synchrotron Radiation (2009) 16(Pt 5) : 658-665

Borel F, de Groot A, Juillan-Binard C, de Rosny E, Laudet V, Pebay-Peyroula E, Fontecilla-Camps JC and Ferrer JL
Crystal structure of the ligand-binding domain of the retinoid X receptor from the ascidian polyandrocarpa misakiensis.
Proteins (2009) 74(2) : 538-542

Deniaud A, Goulielmakis A, Coves J and Pebay-Peyroula E
Differences between CusA and AcrB crystallisation highlighted by protein flexibility.
PLoS One (2009) 4(7) : e6214

Gordeliy VI and Moiseeva ES (2009)
In meso approaches to membrane protein crystallization in Molecules : Aggregation, nucleation, crystallization. Beyong medical and other implications, World Scientific Publishing Co 259-281

Krammer EM, Ravaud S, Dehez E, Pebay-Peyroula E and Chipot C
High-chloride concentrations abolish the binding of adenine nucleotides in the mitochondrial ADP/ATP carrier family.
Biophysical Journal (2009) 97(10) : L25-L27

Moisseva ES, Reshetnyak AB, Borshchevskiy VI, Baeken C, Büldt G and Gordeliy VI
Comparative analysis of quality of membraine protein bacteriorhodopsin crystals obtained in octylglucoside and octylthioglucoside.
Journal of Surface Investigation. X-ray Synchrotron and Neutron Techniques (2009) 3(1) : 29-32

Ravaud S, Robert X, Watzlawick H, Haser R, Mattes R and Aghajari N
Structural determinants of product specificity of sucrose isomerases.
Febs Letters (2009) 583(12) : 1964-1968

Publications 2008

Dehez F, Pebay-Peyroula E and Chipot C
Binding of ADP in the mitochondrial ADP/ATP carrier is driven by an electrostatic funnel.
Journal of the American Chemical Society (2008) 130(38) : 12725-12733

Gordeliy VI and Moiseeva ES (2008)
Crystallization of membrane proteins in Soft matter : From synthetic to biological materials 2008, édité par Dhont G, Gompper G, Nägele G, Richter D and Winkler RG FZJ Juelich

Nury H, Manon F, Arnou B, le Maire M, Pebay-Peyroula E and Ebel C
Mitochondrial bovine ADP/ATP carrier in detergent is predominantly monomeric but also forms multimeric species (dagger).
Biochemistry (2008) 47(47) : 12319-12331

Reshetnyak AB, Borshchevskiy VI, Klare JP, Moiseeva ES, Engelhardt M, Buldt G and Gordeliy VI
Comparative analysis of sensory rhodopsin II structures in complex with a transducer and without It.
Journal of Surface Investigation-X-Ray Synchrotron and Neutron Techniques (2008) 2(6) : 894-899

Rogachev AV, Cherny AY, Ozerin AN, Muzafarov AM, ATatarinova E, Islamov AK, Gordeliy VI and Kuklin AI
Revealing inner structure of the polycarbosilane dendrimers from small-angle neutron scattering data.
International Conference on Theoretical Physics ’Dubna-Nano2008’ (2008) 129 : 51

Uhrikova D, Kucerka N, Teixeira J, Gordeliy V and Balgavy P
Structural changes in dipalmitoylphosphatidylcholine bilayer promoted by Ca2+ ions : a small-angle neutron scattering study.
Chemistry and Physics of Lipids (2008) 155(2) : 80-89

Publications 2007

Gorshkova JE and Gordeliy VI
Investigation of the interaction of dimethyl sulfoxide with lipid membranes by small-angle neutron scattering.
Crystallography Reports (2007) 52(3) : 535-539

Lacapere JJ, Pebay-Peyroula E, Neumann JM and Etchebest C
Determining membrane protein structures : still a challenge !
Trends in Biochemical Sciences (2007) 32(6) : 259-270

Murugova TN, Gordeliy VI, Kuklin AI, Sollodovnikova IM and Yaguzhinsky LS
Study of three-dimensionally ordered structures of intact mitochondria by small-angle neutron scattering.
Crystallography Reports (2007) 52(3) : 521-524

Pebay-Peyroula E (2007)
High resolution structures of membrane proteins : From X-ray crystallography to an integrated approach of membrane in Biophysical analysis of membrane proteins. Investigating structure and function, édité par Pebay-Peyroula E John Wiley and Sons, pp. 3-27

Rogachev AV, Cherny AY, Ozerin AN, Gordeliy VI and Kuklin AI
Spherical sector model for describing the experimental small-angle neutron scattering data for dendrimers.
Crystallography Reports (2007) 52(3) : 500-504

Publications 2006

Dahout-Gonzalez C, Nury H, Trezeguet V, Lauquin GJ, Pebay-Peyroula E and Brandolin G
Molecular, functional, and pathological aspects of the mitochondrial ADP/ATP carrier.
Physiology (Bethesda) (2006) 21 : 242-249

de Rosny E, de Groot A, Jullian-Binard C, Gaillard J, Borel F, Pebay-Peyroula E, Fontecilla-Camps JC and Jouve HM
Drosophila nuclear receptor E75 is a thiolate hemoprotein.
Biochemistry (2006) 45(32) : 9727-9734

Durand D, Cannella D, Dubosclard V, Pebay-Peyroula E, Vachette P and Fieschi F
Small-angle X-ray scattering reveals an extended organization for the autoinhibitory resting state of the p47(phox) modular protein.
Biochemistry (2006) 45(23) : 7185-7193

Efremov R, Gordeliy VI, Heberle J and Buldt G
Time-resolved microspectroscopy on a single crystal of bacteriorhodopsin reveals lattice-induced differences in the photocycle kinetics.
Biophys J (2006) 91(4) : 1441-1451

Fourest-Lieuvin A, Peris L, Gache V, Garcia-Saez I, Juillan-Binard C, Lantez V and Job D
Microtubule regulation in mitosis : tubulin phosphorylation by the cyclin-dependent kinase Cdk1.
Molecular Biology of the Cell (2006) 17(3) : 1041-1050

Mancheño HJM and Pebay-Peyroula E (2006)
Protein-Lipid Interactions. in New Approaches and Emerging Concepts, édité par Mateo CR, Gómez J, Villalaín J and González Ros JM Springer Verlag Berlin Heidelberg, pp.63-100

Murugova TN, Gordeliy VI, Islamov AK, Kuklin AI, Solodovnikova IM and Yaguzhinsky LS
Detection of new type of membrane structure in mitochondria under low-amplitude swelling by small angle neutron scattering.
Biochimica Et Biophysica Acta-Bioenergetics (2006) : 524-525

Nury H, Dahout-Gonzalez C, Trezeguet V, Lauquin GJ, Brandolin G and Pebay-Peyroula E
Relations between structure and function of the mitochondrial ADP/ATP carrier.
Annual Review of Biochemistry (2006) 75 : 713-741

Pebay-Peyroula E (2006)
The mitochondrial ADP/ATP carrier in Structural Biology of Membrane Proteins, édité par Grisshammer R and Buchanan S The Royal Society of Chemistry, pp.373-389

Ravaud S, Do Cao MA, Jidenko M, Ebel C, Le Maire M, Jault JM, Di Pietro A, Haser R and Aghajari N
The ABC transporter BmrA from Bacillus subtilis is a functional dimer when in a detergent-solubilized state.
Biochemical Journal (2006) 395(2) : 345-353

Biou V, Bosecke P, Bois JM, Brandolin G, Kahn R, Mas C, Nauton L, Nury H, Pebay-Peyroula E, Vicat J and Stuhrmann H
X-ray spectroscopy and X-ray diffraction at wavelengths near the K-absorption edge of phosphorus.
Journal of Synchrotron Radiation (2005) 12(Pt 4) : 402-409

de Groot A, de Rosny E, Juillan-Binard C, Ferrer JL, Laudet V, Pierce RJ, Pebay-Peyroula E, Fontecilla-Camps JC and Borel F
Crystal structure of a novel tetrameric complex of agonist-bound ligand-binding domain of Biomphalaria glabrata retinoid X receptor.
Journal of Molecular Biology (2005) 354(4) : 841-853

De Marcos Lousa C, Trezeguet V, David C, Postis V, Arnou B, Pebay-Peyroula E, Brandolin G and Lauquin GJ
Valine 181 is critical for the nucleotide exchange activity of human mitochondrial ADP/ATP carriers in yeast.
Biochemistry (2005) 44(11) : 4342-4348

Fieulaine S, Juillan-Binard C, Serero A, Dardel F, Giglione C, Meinnel T and Ferrer J-L
The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms.
Journal of Biological Chemistry (2005) 280(51) : 42315-42324

Gordeliy VI, Cherezov V and Teixeira J
Strength of thermal undulations of phospholipid membranes.
Phys Rev E Stat Nonlin Soft Matter Phys (2005) 72(6 Pt 1) : 061913

Grudinin S, Buldt G, Gordeliy V and Baumgaertner A
Water molecules and hydrogen-bonded networks in bacteriorhodopsin - Molecular dynamics simulations of the ground state and the M-intermediate.
Biophysical Journal (2005) 88(5) : 3252-3261

Massenet C, Chenavas S, Cohen-Addad C, Dagher MC, Brandolin G, Pebay-Peyroula E and Fieschi F
Effects of p47phox C-terminus phosphorylations on binding towards p40phox and p67phox : structure and function comparaison of p40phox and p67phox SH3 domains.
Journal of Biological Chemistry (2005) 280(14) : 13752-13761

Nury H, Dahout-Gonzalez C, Trezeguet V, Lauquin GJ, Brandolin G and Pebay-Peyroula E
Structural basis for lipid-mediated interactions between mitochondrial ADP/ATP carrier monomers. .
Febs Letters (2005) 579(27) : 6031-6036

Publications 2004

Garcia-Saez I, Blot D, Kahn R and Kozielski F
Crystallization and preliminary crystallographic analysis of the motor domain of human kinetochore-associated protein CENP-E using an automated crystallization procedure.
Acta Crystallographica D Biological Crystallography (2004) 60(Part 6) : 1158-1160

Girard E, Pebay-Peyroula E, Vicat J and Kahn R
Heavy-atom derivatives in lipidic cubic phases : results on hen egg-white lysozyme tetragonal derivative crystals with Gd-HPDO3A complex.
Acta Crystallographica D Biological Crystallography (2004) 60(Pt 8) : 1506 - 1508

Jacquamet L, Ohana J, Joly J, Borel F, Pirocchi M, Charrault P, Bertoni A, Israel-Gouy P, Carpentier P, Kozielski F, Blot D and Ferrer J
Automated analysis of vapor diffusion crystallization drops with an x-ray beam.
Structure (Camb) (2004) 12(7) : 1219 - 1225

Pebay-Peyroula E and Brandolin G
Nucleotide exchange in mitochondria : insight at a molecular level.
Current Opinion in Structural Biology (2004) 14(4) : 420-425

Serre L, Rossy E, Pebay-Peyroula E, Cohen-Addad C and Coves J
Crystal structure of the oxidized form of the periplasmic mercury-binding protein MerP from Ralstonia metallidurans CH34.
Journal of Molecular Biology (2004) 339(1) : 161-171

Publications 2003

Dahout-Gonzalez C, Brandolin G and Pebay-Peyroula E
Crystallization of the bovine ADP/ATP carrier is critically dependent upon the detergent-to-protein ratio.
Acta Crystallographica D Biological Crystallography (2003) 59 : 2353-2355

Landau EM, Pebay-Peyroula E and Neutze R
Structural and mechanistic insight from high resolution structures of archaeal rhodopsins.
Febs Letters (2003) 555(1) : 51-56

Pebay-Peyroula E, Dahout-Gonzalez C, Kahn R, Trezeguet V, Lauquin GJ-M and Brandolin G
Structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside.
Nature (2003) 426(6962) : 39-44

Publications 2002

Neutze R, Pebay-Peyroula E, Edman K, Royant A, Navarro J and Landau EM
Bacteriorhodopsin : a high-resolution structural view of vectorial proton transport.
Biochimica and Biophysica Acta - Biomembranes (2002) 1565(2) : 144-167.

Pebay-Peyroula E, Royant A, Landau EM and Navarro J
Structural basis for sensory rhodopsin function.
Biochimica and Biophysica Acta - Biomembranes (2002) 1565(2) : 196-205.

Royant A, Grizot S, Kahn R, Belrhali H, Fieschi F, Landau EM and Pebay-Peyroula E
Detection and characterization of merohedral twinning in two protein crystals : bacteriorhodopsin and p67phox.
Acta Crystallographica D Biological Crystallography (2002) 58(Pt 5) : 784-791.

Publications 2001

Grizot S, Fieschi F, Dagher MC and Pebay-Peyroula E
The active N-terminal region of p67phox : structure at 1.8 A resolution and biochemical characterizations of the A128V mutant implicated in chronic granulomatous disease.
Journal of Biological Chemistry (2001) 276(24) : 21627-21631.

Grizot S, Grandvaux N, Fieschi F, Faure J, Massenet C, Andrieu JP, Fuchs A, Vignais PV, Timmins PA, Dagher MC and Pebay-Peyroula E
Small angle neutron scattering and gel filtration analyses of neutrophil NADPH oxidase cytosolic factors highlight the role of the C-terminal end of p47(phox) in the association with p40(phox).
Biochemistry (2001) 40(10) : 3127-3133.

Léonard A, Escrive C, Laguerre M, Pebay-Peyroula E, Néri W, Pott T, Katsaras J and Dufourc EJ
Location of cholesterol in DMPC membranes. A comparative study by neutron diffraction and molecular mechanics simulation.
Langmuir (2001) 17 : 2019-2030

Pebay-Peyroula E and Rosenbusch JP
High-resolution structures and dynamics of membrane protein-lipid complexes : a critique.
Current Opinion in Structural Biology (2001) 11(4) : 427-432.

Royant A, Edman K, Ursby T, Pebay-Peyroula E, Landau EM and Neutze R
Spectroscopic characterization of bacteriorhodopsin’s L-intermediate in 3D crystals cooled to 170 K.
Photochemistry and Photobiology (2001) 74(6) : 794-804.

Publications 2000

Chiu ML, Nollert P, Loewen MC, Belrhali H, Pebay-Peyroula E, Rosenbusch JP, Landau EM and Neutze R
Crystallization in cubo : general applicability to membrane proteins lipidic cubic phase crystallization of bacteriorhodopsin and cryotrapping of intermediates : towards resolving a revolving photocycle.
Acta Crystallographica D Biological Crystallography (2000) 56(Pt 6) : 781-784

Pebay-Peyroula E, Neutze R and Landau EM
Lipidic cubic phase crystallization of bacteriorhodopsin and cryotrapping of intermediates : towards resolving a revolving photocycle.
Biochimica and Biophysica Acta (2000) 1460(1) : 119-132

Royant A, Edman K, Ursby T, Pebay-Peyroula E, Landau EM and Neutze R
Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin [see comments].
Nature (2000) 406(6796) : 645-648